FC930268

Overview
NameFC930268
Unique NameFC930268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12748 contig Ccv1_Contig12748:259..934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930268 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 63/121 (52.07%), Postives = 76/121 (62.81%), Query Frame = 2 
Query:   56 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLVVKXXXXXXXXXXKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 418
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K            +   S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKD-----------EGESSKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of FC930268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN7.777e-2752.07Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionC34005F02EF PostHarvC1 Citrus clementina cDNA clone C34005F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930268 ID=FC930268; Name=FC930268; organism=Citrus clementina; type=EST; length=675bp
GACTGAAGGATTGGTTAAGGATTTAGAAACTAGCAGCTAAATTTTAAATT
TAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCCT
GATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGTAGT
CAAAGAGGGTGGTGAGGCGGGGTCGTCGTCGGGCAAGTTCCAGAGGTCTC
TGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCGACG
ACTCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCACCC
CGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAAGC
CCACACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGTGGGGAG
ACTAGGAGCAAGCATCATCACTGAGTGGATGATACGCTCCAGCGATGTAA
ATGAATGTGATGGGTCACCAACTCACCGGATGAGTTGCCTGCAGTCTGTA
GATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTCGTTTTTGT
TAATGCTATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAAT
GCTGCTGACTAAAAAGTAAACAAAGACTGTGTGATGTTTTATATCATATA
ATTGTATGTGACGTGAGGATTGCCT
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