FC930271

Overview
NameFC930271
Unique NameFC930271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3530 contig Ccv1_Contig3530:100..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930271 vs. ExPASy Swiss-Prot
Match: KCO1_ARATH (Calcium-activated outward-rectifying potassium channel 1 OS=Arabidopsis thaliana GN=KCO1 PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 5.835e-17
Identity = 41/106 (38.68%), Postives = 59/106 (55.66%), Query Frame = 3 
Query:  351 MASNGANQPLL-SGFVDSTSQTNNKDA----PKRRRLRRCRSAPQTDVAALD---INEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKT 644
            M+S+ A  PLL +  +D+ +Q  N ++     ++RRLRR RSAP+ D    D   I+E         +F    PN +RV+++LA YL  G+L FY V  QI G KT
Sbjct:    1 MSSDAARTPLLPTEKIDTMAQDFNLNSRTSSSRKRRLRRSRSAPRGDCMYNDDVKIDEPPPHPSKIPMFSDLNPNLRRVIMFLALYLTIGTLCFYLVRDQISGHKT 106

HSP 2 Score: 48.9062 bits (115), Expect = 5.835e-17
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 2 
Query:  638 KNHEILDSIYFCIVTMTTVGYGDLVPYSVVSK 733
            K   ++D++YFCIVTMTTVGYGDLVP S  S+
Sbjct:  105 KTSGVVDALYFCIVTMTTVGYGDLVPNSSASR 136
The following BLAST results are available for this feature:
BLAST of FC930271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KCO1_ARATH5.835e-1738.68Calcium-activated outward-rectifying potassium cha... [more]
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Properties
Property NameValue
Genbank descriptionC34005F05EF PostHarvC1 Citrus clementina cDNA clone C34005F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930271 ID=FC930271; Name=FC930271; organism=Citrus clementina; type=EST; length=733bp
GATTTTCGCAGATTCTGTTACAACTTCACTACACTGTCTGAAGGTGGAAA
AAAGCAACAGCCTTTTTTTCATTCCAAAGAGTACATATTCAGAAGCTGGC
TTTGGTAAGCTGAAAGCAGACAAGTGATTGCACAAGGGATCAAATTTCTT
GAATTTTCCAGGAATTTTCAGAGAAGTTTCTGGCCATGTTCCTTTCTTTG
TCAAAGCCCTAGGAATTGGATTTATAAAGTTGCTTCCTTTCGCTTGATCT
GGTAGGGCTCACAACACACTCACTTCATAAAGTTTCTTCCTTGATCTGGG
GGTGGTCTTGTGTCAGCTTGATAGTCTGAGTCCGCTTTTGCTATCCTCTA
ATGGCCTCCAATGGTGCAAATCAGCCGCTGCTCTCAGGATTTGTTGATTC
AACGTCTCAAACAAATAATAAAGATGCTCCCAAGAGAAGAAGGCTTCGTC
GGTGTAGAAGTGCTCCCCAGACTGATGTTGCTGCTCTAGACATAAATGAA
AAAGACTCAACTCACCTTTCTGAGTCCCTTTTTGGCAAACCCCGCCCAAA
TTTTAAGAGGGTACTTGTCTACCTGGCTGCCTACCTTGGTGGGGGGTCAT
TATCCTTCTATGCTGTCAACAGTCAAATCGAAGGACTAAAAACCATGAAA
TTCTAGATTCTATTTATTTCTGCATCGTGACAATGACCACTGTAGGGTAT
GGAGACCTTGTGCCCTATAGTGTCGTTTCGAAA
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