FC930272

Overview
NameFC930272
Unique NameFC930272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930272_ssr305 microsatellite FC930272_ssr305:305..316. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15128 contig Ccv1_Contig15128:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930272 vs. ExPASy Swiss-Prot
Match: DDI1_PHANO (DNA damage-inducible protein 1 OS=Phaeosphaeria nodorum GN=DDI1 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 49/175 (28.00%), Postives = 90/175 (51.43%), Query Frame = 2 
Query:  212 ADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNN-AEKLSALGVKDEDLVMMVSN---------AASSPATNNLSFNPDGSAVNPAAFQQHIRNDANLMTQLFQSDPELAQVLLGNDLNKLQDXXXXXXXXXXXXXXXXXXXMALLYADPFDVEAQKKIESCIR 706
            +D ++++L++ P  TV+++K  +E ET +P   Q +  NG+ ++   + L  +G++D +++ ++           AAS PA       P G + +P A +Q +  +  +  +L Q DPEL  ++  ND ++ ++                   +ALL  DPF+VEAQ+KIE  IR
Sbjct:   15 SDGELLTLELPPGSTVKDLKGFIEAETNLPAASQGIYLNGQPVSQETQTLENVGIRDGEMLAVIVRQNRQQPQQPAASRPA-------PVGQS-DPEAVRQQVLRNPQVQAELRQRDPELLAIM--NDADRWREAFASRQNSAQNAERERQNQIALLNEDPFNVEAQRKIEDIIR 179
The following BLAST results are available for this feature:
BLAST of FC930272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DDI1_PHANO7.025e-1328.00DNA damage-inducible protein 1 OS=Phaeosphaeria no... [more]
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Properties
Property NameValue
Genbank descriptionC34005F07EF PostHarvC1 Citrus clementina cDNA clone C34005F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930272 ID=FC930272; Name=FC930272; organism=Citrus clementina; type=EST; length=706bp
GATCGCAAACGGGTCTTGCTAAATTATTTACAAAAATAAACGATAACTCT
TAAAAATGTAAAAAAAACAAGACCTTCTTCACAACGAAAACTGAGAAAGC
AAAGCACTATTTATAAGCCCAAATCAAAACAATCAAAAAGTCACAAGGTT
CCAAGTAAAATAGAGAGATCCAATCTGAAGGAGACACAAGATGAGGATTA
CTGTAATGACTGCAGATGAACAGATCATCAGCTTGGACGTTGACCCACAT
GAAACTGTTGAAAACGTGAAAGCTTTGCTCGAAGTGGAGACACAGGTGCC
GCTTCAGCAGCAGCAGCTGCTTTACAATGGGAGGGAGATGAATAATGCTG
AAAAATTGAGTGCATTGGGTGTTAAAGATGAGGATTTGGTGATGATGGTC
TCTAATGCTGCATCCAGTCCAGCAACCAATAACTTGAGCTTCAATCCAGA
TGGGTCTGCTGTCAACCCTGCGGCTTTCCAGCAGCACATTCGAAATGATG
CTAATCTTATGACTCAACTGTTTCAGAGTGATCCTGAATTAGCTCAAGTT
CTCCTTGGAAACGATCTCAATAAGCTGCAGGACCTATTAAGAGAGCGTAG
TCGTCAAAGGTCTGAGTTACGGCGTCGACAGGAAGAGGAGATGGCGCTTC
TTTATGCAGATCCTTTTGATGTTGAAGCACAAAAGAAAATTGAAAGCTGC
ATTCGC
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