FC930273

Overview
NameFC930273
Unique NameFC930273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15126 contig Ccv1_Contig15126:58..488. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930273 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.518e-44
Identity = 87/98 (88.78%), Postives = 89/98 (90.82%), Query Frame = 2
Query:  137 MVPEPEDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAYKEIKDMGKKVYDLCGIKESDTGLAAPSQWDLVSDKHMMQEEQPLLVARCTMIINPN 430
            M PEPED IKDEKNPRPLDEDDIALLKTYGLGPYST IKKA KE+KD+ KKV DLCGIKESDTGLAAPSQWDLVSDK MMQEEQPL VARCT IINPN
Sbjct:    1 MAPEPED-IKDEKNPRPLDEDDIALLKTYGLGPYSTHIKKAEKEVKDLAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPN 97          
BLAST of FC930273 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.577e-43
Identity = 83/98 (84.69%), Postives = 88/98 (89.80%), Query Frame = 2
Query:  137 MVPEPEDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAYKEIKDMGKKVYDLCGIKESDTGLAAPSQWDLVSDKHMMQEEQPLLVARCTMIINPN 430
            M PEPED+I +EKNPRPLDEDDIALLKTYGLGPYSTSIKK  KEIK+M KK+ DLCGIKESDTGLA PSQWDLVSDK MMQEEQPL VARCT II+PN
Sbjct:    1 MAPEPEDDIMNEKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKEMAKKINDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIISPN 98          
BLAST of FC930273 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 5.165e-42
Identity = 84/98 (85.71%), Postives = 86/98 (87.76%), Query Frame = 2
Query:  137 MVPEPEDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAYKEIKDMGKKVYDLCGIKESDTGLAAPSQWDLVSDKHMMQEEQPLLVARCTMIINPN 430
            M  E ED++KDEKNPRPLDEDDIALLKTYGLGPYS SIKK  KEIKDM KKV DL GIKESDTGLAAPSQWDLVSDK MMQEEQPL VARCT IINPN
Sbjct:    1 MAIEHEDDLKDEKNPRPLDEDDIALLKTYGLGPYSASIKKVEKEIKDMSKKVNDLIGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPN 98          
BLAST of FC930273 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.563e-41
Identity = 81/98 (82.65%), Postives = 86/98 (87.76%), Query Frame = 2
Query:  137 MVPEPEDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAYKEIKDMGKKVYDLCGIKESDTGLAAPSQWDLVSDKHMMQEEQPLLVARCTMIINPN 430
            MV + EDEI+DEKNPRPLDEDDIALLKTYGLGPYS  IKK  KEIKD+ KK+ DLCGIKESDTGLA PSQWDLVSDK MMQEEQPL VARCT II+PN
Sbjct:    1 MVRDIEDEIRDEKNPRPLDEDDIALLKTYGLGPYSAPIKKVEKEIKDLAKKINDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIISPN 98          
BLAST of FC930273 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.393e-25
Identity = 57/91 (62.64%), Postives = 67/91 (73.63%), Query Frame = 2
Query:  152 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAYKEIKDMGKKVYDLCGIKESDTGLAAPSQWDLVSDKHMMQEEQPLLVARCTMIIN 424
            EDE+ +E  P  LDE DIALLK+YG+GPYS SI+   ++IK M  KV +LCGIKESDTG+  PSQWDLV DK    EE PL VARCT II+
Sbjct:    8 EDELLNETAPVALDEGDIALLKSYGVGPYSKSIRILEEDIKKMTSKVNELCGIKESDTGIGPPSQWDLVVDKTSAHEEPPLQVARCTKIID 98          
BLAST of FC930273 vs. ExPASy Swiss-Prot
Match: PRS7_MOUSE (26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5)

HSP 1 Score: 107.842 bits (268), Expect = 1.846e-23
Identity = 54/91 (59.34%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  152 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAYKEIKDMGKKVYDLCGIKESDTGLAAPSQWDLVSDKHMMQEEQPLLVARCTMIIN 424
            ++E KD+K  R LDE DIALLKTYG   YS  IK+   +I+ + KK+ +L GIKESDTGLA P+ WDL +DK  +Q EQPL VARCT IIN
Sbjct:   13 KEEEKDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIIN 103          
BLAST of FC930273 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 2.410e-23
Identity = 56/91 (61.54%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  152 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAYKEIKDMGKKVYDLCGIKESDTGLAAPSQWDLVSDKHMMQEEQPLLVARCTMIIN 424
            EDE KD+K  R LDE DIALLKTYG   YS  IK+   +I+ + KK+ +L GIKESDTGLA P+ WDL +DK  +Q EQPL VARCT IIN
Sbjct:   14 EDE-KDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIIN 103          
BLAST of FC930273 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 2.410e-23
Identity = 56/91 (61.54%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  152 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAYKEIKDMGKKVYDLCGIKESDTGLAAPSQWDLVSDKHMMQEEQPLLVARCTMIIN 424
            EDE KD+K  R LDE DIALLKTYG   YS  IK+   +I+ + KK+ +L GIKESDTGLA P+ WDL +DK  +Q EQPL VARCT IIN
Sbjct:   14 EDE-KDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIIN 103          
BLAST of FC930273 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 2.410e-23
Identity = 56/91 (61.54%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  152 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAYKEIKDMGKKVYDLCGIKESDTGLAAPSQWDLVSDKHMMQEEQPLLVARCTMIIN 424
            EDE KD+K  R LDE DIALLKTYG   YS  IK+   +I+ + KK+ +L GIKESDTGLA P+ WDL +DK  +Q EQPL VARCT IIN
Sbjct:   14 EDE-KDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIIN 103          
BLAST of FC930273 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 2.410e-23
Identity = 56/91 (61.54%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  152 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAYKEIKDMGKKVYDLCGIKESDTGLAAPSQWDLVSDKHMMQEEQPLLVARCTMIIN 424
            EDE KD+K  R LDE DIALLKTYG   YS  IK+   +I+ + KK+ +L GIKESDTGLA P+ WDL +DK  +Q EQPL VARCT IIN
Sbjct:   14 EDE-KDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIIN 103          
The following BLAST results are available for this feature:
BLAST of FC930273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PRS7_PRUPE5.518e-4488.7826S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7_ORYSJ3.577e-4384.6926S protease regulatory subunit 7 OS=Oryza sativa ... [more]
PRS7_SPIOL5.165e-4285.7126S protease regulatory subunit 7 OS=Spinacia oler... [more]
PRS7A_ARATH2.563e-4182.6526S protease regulatory subunit 7 homolog A OS=Ara... [more]
PRS7_DICDI4.393e-2562.6426S protease regulatory subunit 7 OS=Dictyostelium... [more]
PRS7_MOUSE1.846e-2359.3426S protease regulatory subunit 7 OS=Mus musculus ... [more]
PRS7_RAT2.410e-2361.5426S protease regulatory subunit 7 OS=Rattus norveg... [more]
PRS7_MACFA2.410e-2361.5426S protease regulatory subunit 7 OS=Macaca fascic... [more]
PRS7_HUMAN2.410e-2361.5426S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_BOVIN2.410e-2361.5426S protease regulatory subunit 7 OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34005F09EF PostHarvC1 Citrus clementina cDNA clone C34005F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930273 ID=FC930273; Name=FC930273; organism=Citrus clementina; type=EST; length=431bp
GAAACTCGTGCGGTAGTGCCTCTCTTTCCCCCAAACACCTCGACGACACC
GTTTCCTCAGAAAGACCTCGCCGACGGTTTTCAACGCCCAATCTTCCTCT
CTAGAACTTGCAAGCAATCAGGAAATTCATAAAACAATGGTACCTGAGCC
GGAAGATGAGATCAAGGACGAGAAGAATCCCAGACCTCTTGATGAAGATG
ACATTGCACTGCTTAAAACATATGGTTTAGGACCGTATTCTACTAGCATA
AAGAAAGCATATAAGGAGATTAAGGACATGGGCAAGAAAGTCTATGACTT
GTGTGGTATCAAGGAATCTGACACAGGCTTAGCTGCACCCAGCCAGTGGG
ATCTTGTTTCTGATAAGCATATGATGCAAGAGGAGCAGCCTCTTCTAGTT
GCGAGATGCACCATGATTATCAATCCAAATT
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