FC930275

Overview
NameFC930275
Unique NameFC930275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 2.791e-58
Identity = 111/134 (82.84%), Postives = 113/134 (84.33%), Query Frame = 3
Query:   81 KVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            K+KI INGFGRIGRLVARV LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD KTLLFGEKPVTVFGVRNPEEIPW ETGAE+VVESTGVFT               VIISAPSKDAPMF  G
Sbjct:    5 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDSKTLLFGEKPVTVFGVRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVG 138          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 5.263e-57
Identity = 108/136 (79.41%), Postives = 113/136 (83.09%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            M KVKI INGFGRIGRLVARVILQ DD ELVA+NDPFITTDYMTYMFKYDSVHGQWKHHELKVKD+KTLLFGE+PVTVFG RNPEEIPW +TGA+YVVESTGVFT               VIISAPSKDAPMF  G
Sbjct:    1 MAKVKIGINGFGRIGRLVARVILQSDDCELVAINDPFITTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGERPVTVFGNRNPEEIPWGQTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVG 136          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 5.263e-57
Identity = 107/136 (78.68%), Postives = 112/136 (82.35%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            M K+KI INGFGRIGRLVARV LQRDDVELVAVNDPFI+ +YMTYMFKYDSVHGQWKHHELK KDDKTLLFGEKPVTVFG+RNPEEIPW E GA+YVVESTGVFT               VIISAPSKDAPMF  G
Sbjct:    1 MAKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISVEYMTYMFKYDSVHGQWKHHELKAKDDKTLLFGEKPVTVFGIRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVG 136          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 8.977e-57
Identity = 107/135 (79.26%), Postives = 112/135 (82.96%), Query Frame = 3
Query:   78 GKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            GK+KI INGFGRIGRLVARV L RDDVELVAVNDPFITTDYMTYMFKYD+VHGQWKHHELKVKD+KTLLFGEKPVTVFG RNPEEIPW ETGAE+VVESTGVFT               V+ISAPS DAPMF  G
Sbjct:    3 GKIKIGINGFGRIGRLVARVALARDDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHHELKVKDEKTLLFGEKPVTVFGCRNPEEIPWGETGAEFVVESTGVFTTKEKASAHLKGGAKKVVISAPSADAPMFVVG 137          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 1.172e-56
Identity = 104/134 (77.61%), Postives = 115/134 (85.82%), Query Frame = 3
Query:   81 KVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            K++I INGFGRIGRLVARV+LQRDDVELVAVNDPFITT+YMTYMFKYDSVHGQWKH+ELK+KD+KTLLFGEKPVTVFG+RNPE+IPWAE GA+YVVESTGVFT               V+ISAPSKDAPMF  G
Sbjct:    5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVG 138          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.531e-56
Identity = 104/136 (76.47%), Postives = 113/136 (83.09%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            MGK+KI INGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHGQWKH ++K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFT               V+ISAPSKDAPMF CG
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCG 136          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.531e-56
Identity = 104/136 (76.47%), Postives = 113/136 (83.09%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            MGK+KI INGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHGQWKH ++K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFT               V+ISAPSKDAPMF CG
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCG 136          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 9.925e-56
Identity = 104/134 (77.61%), Postives = 114/134 (85.07%), Query Frame = 3
Query:   81 KVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            K+KI INGFGRIGRLVARVILQR+DVELVAVNDPFITT+YMTYMFKYDSVHGQWKH+ELKVKD+KTLLFGEKPVTVFG+RNPE+IPW E GA++VVESTGVFT               V+ISAPSKDAPMF  G
Sbjct:    5 KIKIGINGFGRIGRLVARVILQRNDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVG 138          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.296e-55
Identity = 104/136 (76.47%), Postives = 112/136 (82.35%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            MGK+KI INGFGRIGRLVARV LQ DDVELVAVNDPFITT+YMTYMFKYD+VHG WKH ++K+KDDKTLLFGEKPVTVFGVRNPEEIPW E GA+YVVESTGVFT               V+ISAPSKDAPMF  G
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTEYMTYMFKYDTVHGHWKHSDIKLKDDKTLLFGEKPVTVFGVRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVG 136          
BLAST of FC930275 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.693e-55
Identity = 107/136 (78.68%), Postives = 112/136 (82.35%), Query Frame = 3
Query:   75 MGKVKIRINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFCCG 482
            M KVKI INGFGRIGRLVARV L RDDVELVAVNDPFIT DYM YMFKYD+VHGQ+KHHELKVKD+KTLLFG+KPV VFG+RNPEEIPWAETGAEYVVESTGVFT               VIISAPSKDAPMF  G
Sbjct:    1 MAKVKIGINGFGRIGRLVARVALVRDDVELVAVNDPFITVDYMAYMFKYDTVHGQYKHHELKVKDEKTLLFGDKPVAVFGLRNPEEIPWAETGAEYVVESTGVFTEKEKAAAHLKGGAKKVIISAPSKDAPMFVVG 136          
The following BLAST results are available for this feature:
BLAST of FC930275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
G3PC_MAGLI2.791e-5882.84Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU5.263e-5779.41Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_PETHY5.263e-5778.68Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_RANAC8.977e-5779.26Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH1.172e-5677.61Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ1.531e-5676.47Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI1.531e-5676.47Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL9.925e-5677.61Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU1.296e-5576.47Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL1.693e-5578.68Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC34005F11EF PostHarvC1 Citrus clementina cDNA clone C34005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930275 ID=FC930275; Name=FC930275; organism=Citrus clementina; type=EST; length=513bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCAGAATTAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCA
TGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTG
TCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACT
GGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAA
GGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCC
CCAGCAAGGATGCTCCTATGTTTTGTTGTGGGTGTCAATGAGCACGAGTA
CAAACCAGAGCTC
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