FC930282

Overview
NameFC930282
Unique NameFC930282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15114 contig Ccv1_Contig15114:3..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930282 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 3.036e-100
Identity = 186/193 (96.37%), Postives = 187/193 (96.89%), Query Frame = 2
Query:   89 MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLLSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVA 667
            MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTD    GAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL GQL SAMVVRKPAHIFLDELGIDYDEQD+YVVIKHAALFTSTIMSKLLARPNVKLFNAVA
Sbjct:    1 MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVA 193          
BLAST of FC930282 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.598e-71
Identity = 132/171 (77.19%), Postives = 149/171 (87.13%), Query Frame = 2
Query:  155 SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLLSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVA 667
            SSF+G P++PS +R+QP K+    ++S+S + SPPYDL  F FDPIKESIVSREMTRRYM DMITYADTD    GAGS+GL C YELSKNP++Q+AIIEQSVSPGGGAWL GQL S MVVRKPAH+FLDELGI+YDEQD+YVVIKHAALFTSTIMSKLLARPNVKLFNAVA
Sbjct:   20 SSFYGTPLAPSSIRVQPTKAGAKPSISMSGAPSPPYDLKAFTFDPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSSGLVC-YELSKNPSVQVAIIEQSVSPGGGAWLGGQLFSGMVVRKPAHLFLDELGIEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVA 189          
BLAST of FC930282 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.244e-69
Identity = 138/194 (71.13%), Postives = 161/194 (82.99%), Query Frame = 2
Query:   89 MAAMASTAFAPSVSSTT-NKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLLSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVA 667
            MAA+AST    S+SST   +LFDSSFHG+ +S + + +      +P + S+ A+ +  YDLN F FDPIKESIVSREMTRRYMTDMITYA+TD    GAGSAGLS AYE+SKNPN+Q+AIIEQSVSPGGGAWL GQL SAM+VRKPAH+FLDE+G+ YDEQD+YVV+KHAALFTSTIMSKLLARPNVKLFNAVA
Sbjct:    1 MAAIASTL---SLSSTKPQRLFDSSFHGSAISAAPISI----GLKPRSFSVRATTAG-YDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVA 186          
BLAST of FC930282 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.128e-62
Identity = 128/191 (67.02%), Postives = 146/191 (76.44%), Query Frame = 2
Query:  128 SSTTNKLFDSSFHGAPMSPSLLRLQPIK----------SSRPNNLSISASAS-PPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLLSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVA 667
            ++  + L  SSF G+ + P+  R  P             + P   S+S S+S PPYDL +F+F PIKESIVSREMTRRYMTDMITYADTD    GAGSAGLSCAYELSK+P + IAI+EQSVSPGGGAWL GQL SAMVVRKPAH+FLDELG+ YDE + YVVIKHAALFTST+MS LLARPNVKLFNAVA
Sbjct:    3 TAAASSLLKSSFAGSRL-PAATRTTPASLVVATGPRGAGAGPICASMSMSSSNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKDPAVSIAIVEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVAYDEAEDYVVIKHAALFTSTVMSLLLARPNVKLFNAVA 192          
BLAST of FC930282 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.473e-62
Identity = 125/189 (66.14%), Postives = 145/189 (76.72%), Query Frame = 2
Query:  128 SSTTNKLFDSSFHGAPMSPSLLRLQ---------PIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLLSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVA 667
            ++  + L  SSF G+ + PS  R           P     P   SIS S +PPYDL +F+F PIKESIVSREMTRRYMTDMIT+ADTD    GAGSAGLSCAYELSK+P + +AI+EQSVSPGGGAWL GQL SAMVVR+PAH+FLDELG+ YDE + YVV+KHAALFTST+MS+LLARPNVKLFNAVA
Sbjct:    3 TTAASSLLKSSFAGSRL-PSATRTTTPSSVAVATPRAGGGPIRASIS-SPNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITHADTDVVIVGAGSAGLSCAYELSKDPTVSVAIVEQSVSPGGGAWLGGQLFSAMVVRRPAHLFLDELGVGYDEAEDYVVVKHAALFTSTVMSRLLARPNVKLFNAVA 189          
BLAST of FC930282 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.613e-43
Identity = 87/144 (60.42%), Postives = 114/144 (79.17%), Query Frame = 2
Query:  242 ASASPPYDLN-TFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAIIEQSVSPGGGAWLSGQLLSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVA 667
            + A P Y L+ +F F PI+ES VSR MTRRY +D+  YA++D    GAGSAGL+ AY + ++ P+++IAIIE SV+PGGGAWL GQL SAMVVRKPA +FL+E+G+ Y+++  YVV+KHAALFTST+M++ LA PNVKLFNA A
Sbjct:   37 SKAYPTYSLDESFSFAPIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEASVAPGGGAWLGGQLFSAMVVRKPADLFLNEIGVPYEDEGDYVVVKHAALFTSTVMARTLALPNVKLFNATA 180          
BLAST of FC930282 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 8.404e-42
Identity = 85/130 (65.38%), Postives = 103/130 (79.23%), Query Frame = 2
Query:  275 FKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLSGQLLSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNA 661
            FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS AY L K  P+++IAIIE SVSPGGGAWL GQL SAM++RKPA  FL E+G+ Y+++ +YVV+KHAALFTSTIMSK+L  PN+KLFNA
Sbjct:   44 FKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIIGAGSCGLSAAYILGKKRPDLKIAIIEASVSPGGGAWLGGQLFSAMIMRKPADAFLREVGVPYEDEGNYVVVKHAALFTSTIMSKVLQMPNIKLFNA 173          
BLAST of FC930282 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.434e-41
Identity = 85/161 (52.80%), Postives = 115/161 (71.43%), Query Frame = 2
Query:  197 LQPIKSSRPNNLSISASA---SPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAIIEQSVSPGGGAWLSGQLLSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVA 667
            + P+KS + +N +++  A    P  +L   KF PIKE  V R M RRY  DM   A +D    GAGSAGLSCAY L +  P+++I I+E +V+PGGG WL GQL+SAMV RKPA  FLD++G+ Y+++ ++VV+KHAALFTST++SK+LA PNVK+FNA A
Sbjct:   24 MDPLKSKQQSNATVNKPAFKPEPAVNLTPIKFAPIKEHQVQRAMVRRYFQDMEERAISDVIIVGAGSAGLSCAYALGTARPDLKITILESNVAPGGGCWLGGQLMSAMVCRKPADEFLDQVGVPYEDEGNFVVVKHAALFTSTVLSKVLAMPNVKMFNATA 184          
BLAST of FC930282 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.445e-41
Identity = 86/134 (64.18%), Postives = 107/134 (79.85%), Query Frame = 2
Query:  275 FKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLSGQLLSAMVVRKPAHIFLDELGIDYDE--QDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVA 667
            FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS AY L+K  P+++IAI+E SVSPGGGAWL GQL SAMV+R+PA +FL+ELG+ Y+E    +YVV+KHA+LFTST+MSK+L+ PNVKLFNA A
Sbjct:   48 FKFAPIRESQVSRAMTRRYFEDLDKYAESDVVIVGAGSCGLSTAYVLAKARPDLKIAIVEASVSPGGGAWLGGQLFSAMVMRRPAEVFLNELGVPYEEDANPNYVVVKHASLFTSTLMSKVLSFPNVKLFNATA 181          
BLAST of FC930282 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.214e-40
Identity = 85/130 (65.38%), Postives = 101/130 (77.69%), Query Frame = 2
Query:  275 FKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLSGQLLSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNA 661
            FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS  Y L K  P+++IAIIE SVSPGGGAWL GQL SAMV+RKPA  FL E+G+ Y+++ +YVV+KHAALFTSTIMSK+L  PN KLFNA
Sbjct:   48 FKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIVGAGSCGLSTRYILGKKRPDLKIAIIEASVSPGGGAWLGGQLFSAMVMRKPADAFLREVGVPYEDEGNYVVVKHAALFTSTIMSKVLQLPNCKLFNA 177          
The following BLAST results are available for this feature:
BLAST of FC930282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
THI4_CITSI3.036e-10096.37Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL6.598e-7177.19Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH1.244e-6971.13Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE1.128e-6267.02Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.473e-6266.14Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI2_SCHPO2.613e-4360.42Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_FUSOX8.404e-4265.38Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_UROFA1.434e-4152.80Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI4_ASPOR2.445e-4164.18Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_FUSSH1.214e-4065.38Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]

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Properties
Property NameValue
Genbank descriptionC34005G06EF PostHarvC1 Citrus clementina cDNA clone C34005G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930282 ID=FC930282; Name=FC930282; organism=Citrus clementina; type=EST; length=668bp
GAACAGTCATCATCACTGCTGCAAATCAAATTACTTCTCATTATCAAACT
TCTAAGCAGCAGGGGAAGGAGGGGTAAAAAAAAAAAACATGGCAGCCATG
GCTTCTACAGCTTTCGCTCCTTCAGTTTCGTCTACCACCAATAAGCTCTT
TGACTCATCCTTTCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTC
AACCCATCAAATCTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCT
TCTCCTCCTTATGACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATC
CATTGTTTCTCGTGAAATGACGCGCAGGTACATGACGGACATGATCACTT
ATGCTGACACTGATGTGGTAGTGGTTGGTGCTGGTTCTGCTGGCCTCTCT
TGTGCTTATGAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGA
ACAGTCTGTTAGCCCCGGCGGTGGCGCGTGGCTCAGTGGACAGCTCCTCT
CTGCCATGGTTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGC
ATCGACTACGATGAGCAAGACAGCTATGTTGTGATCAAGCATGCAGCGCT
GTTCACCTCCACTATAATGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGC
TCTTTAATGCAGTGGCAG
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