FC930283

Overview
NameFC930283
Unique NameFC930283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10088 contig Ccv1_Contig10088:8..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930283 vs. ExPASy Swiss-Prot
Match: FAD5B_DICDI (Delta(5) fatty acid desaturase B OS=Dictyostelium discoideum GN=fadB PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  212 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYIE 490
            K  T +E+  HN+  DLWI + GKVY++T+W   HPGG+  LL  AG+D T+ F +YHP T     DK ++   ++ +E+  IS      Y+E
Sbjct:   13 KLYTWDEVSKHNQKNDLWIIVDGKVYNITKWVPLHPGGEDILLLSAGRDATNLFESYHPMT-----DKHYS--LIKQYEIGYISSYEHPKYVE 98          
BLAST of FC930283 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.258e-12
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 2
Query:  197 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF-IAYHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYI 487
            M +++K ++ EE+  HNK +D W+ I GKVYDVT +   HPGGD  LL+  G+D T+ F    H  TA   +DK F G      E+   S    R Y+
Sbjct:    1 MSSDRKVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFIG------EIDSSSVPATRTYV 92          
BLAST of FC930283 vs. ExPASy Swiss-Prot
Match: FADS2_DANRE (Fatty acid desaturase 2 OS=Danio rerio GN=fads2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 48/156 (30.77%), Postives = 77/156 (49.36%), Query Frame = 2
Query:  221 TAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQDFEVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCES-----VWAHLGSGMLLGFLWIQVLMLVTI 673
            T EE++ H K  D W+ ++ KVY+V++W K+HPGG   L + AG+D T+AF A+HP    Q + K      + + E SE S+D ++            ++     C  T   L F + +  +L  E+     VW + G+G      WI  L++  I
Sbjct:   22 TWEEVQKHTKHGDQWVVVERKVYNVSQWVKRHPGGLRILGHYAGEDATEAFTAFHPNL--QLVRKYLKPLLIGELEASEPSQDRQKNAALVEDFRALRERLEAEGCFKT-QPLFFALHLGHILLLEAIAFMMVW-YFGTG------WINTLIVAVI 167          
BLAST of FC930283 vs. ExPASy Swiss-Prot
Match: FADS2_PONAB (Fatty acid desaturase 2 OS=Pongo abelii GN=FADS2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 53/172 (30.81%), Postives = 85/172 (49.42%), Query Frame = 2
Query:  182 QSAALMEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYYV-----QDF-EVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESV-W---AHLGSGMLLGFLWIQVLM 661
            + AA  E      + EE++ HN   D W+ I  KVY++T+W+ QHPGG   + + AG+D TDAF A+HP   +  ++L  L  G        QD  + S+I++D+R L        +F K  HV           F++++  ++  ES+ W    + G+G      WI  L+
Sbjct:    9 EGAAEREVSVPTFSWEEIQKHNLRTDRWLVIDRKVYNITKWSIQHPGGQRVIGHYAGEDATDAFRAFHPDLEFVGKFLKPLLIGELAPEEPSQDHGKNSKITEDFRALRKTAEDMNLF-KTNHV----------FFLLLLAHIIALESIAWFTVFYFGNG------WISTLI 163          
BLAST of FC930283 vs. ExPASy Swiss-Prot
Match: FADS2_MACFA (Fatty acid desaturase 2 OS=Macaca fascicularis GN=FADS2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = 2
Query:  182 QSAALMEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYYVQDFEVSEISKD 469
            + AA  E      + EE++ HN   D W+ I  KVY++T+W+ QHPGG   + + AG+D TDAF A+HP       D  F G +++   + E++ +
Sbjct:    9 EGAAEREVPMPTFSWEEIQKHNLRTDRWLVIDRKVYNITKWSTQHPGGQRVIGHYAGEDATDAFRAFHP-------DLKFVGKFLKPLLIGELAPE 97          
BLAST of FC930283 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 39/89 (43.82%), Postives = 50/89 (56.18%), Query Frame = 2
Query:  197 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF-IAYHPGTAWQYLDKLFTGYYVQDFEVSEI 460
            M  E K  T  E+  HN A+D W+ I GKVYDVT++   HPGGD  LL+  G+D TD F    H  +A   LD+    YYV D + + I
Sbjct:    1 MGGETKVFTLAEVSQHNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSARAMLDE----YYVGDIDSATI 85          
BLAST of FC930283 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 2
Query:  197 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF-IAYHPGTAWQYLDKLFTGYYVQDFEVSEI 460
            M +EKK +  EE+  HNK +D W+ I GKVYDVT +   HPGGD  LL+  G+D T+ F    H  TA   ++K    YY+ + + S +
Sbjct:    1 MASEKKVLGFEEVSQHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMEK----YYIGEIDSSTV 85          
BLAST of FC930283 vs. ExPASy Swiss-Prot
Match: FADS2_HUMAN (Fatty acid desaturase 2 OS=Homo sapiens GN=FADS2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 47/149 (31.54%), Postives = 76/149 (51.01%), Query Frame = 2
Query:  182 QSAALMEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAW--QYLDKLFTGYYV-----QDF-EVSEISKDYRRLYIEFAKQGMFEKKQHVASCALTCVALMFVVVVYGVLCCESV 604
            + AA  E      + EE++ HN   D W+ I  KVY++T+W+ QHPGG   + + AG+D TDAF A+HP   +  ++L  L  G        QD  + S+I++D+R L        +F K  HV           F++++  ++  ES+
Sbjct:    9 EGAAEREVSVPTFSWEEIQKHNLRTDRWLVIDRKVYNITKWSIQHPGGQRVIGHYAGEDATDAFRAFHPDLEFVGKFLKPLLIGELAPEEPSQDHGKNSKITEDFRALRKTAEDMNLF-KTNHV----------FFLLLLAHIIALESI 146          
BLAST of FC930283 vs. ExPASy Swiss-Prot
Match: FAD5A_DICDI (Delta(5) fatty acid desaturase A OS=Dictyostelium discoideum GN=fadA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 2
Query:  212 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHP 388
            K  +  EL  HN   D W+++ GKVYD+T W   HPGG   LL  AG+DVT+ F +YHP
Sbjct:   14 KQYSWSELAKHNTENDCWVAVDGKVYDITRWVPLHPGGKEVLLLAAGRDVTNLFESYHP 72          
BLAST of FC930283 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 2
Query:  212 KYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAY-HPGTAWQYLDKLFTGYYVQDFEVSEI 460
            K  T  E+  HN ++D W+ I GKVYDVT++ + HPGGD  LL+  G+D TD F    H  +A   LD+    YYV D + S I
Sbjct:    3 KIFTLAEVAQHNNSKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDIGHSSSAKAMLDE----YYVGDIDSSSI 82          
The following BLAST results are available for this feature:
BLAST of FC930283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
FAD5B_DICDI2.494e-1239.78Delta(5) fatty acid desaturase B OS=Dictyostelium ... [more]
CYB51_ARATH3.258e-1239.80Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
FADS2_DANRE9.479e-1230.77Fatty acid desaturase 2 OS=Danio rerio GN=fads2 PE... [more]
FADS2_PONAB1.238e-1130.81Fatty acid desaturase 2 OS=Pongo abelii GN=FADS2 P... [more]
FADS2_MACFA1.238e-1135.42Fatty acid desaturase 2 OS=Macaca fascicularis GN=... [more]
CYB5_TOBAC1.238e-1143.82Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5_BRAOB1.238e-1141.57Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
FADS2_HUMAN1.617e-1131.54Fatty acid desaturase 2 OS=Homo sapiens GN=FADS2 P... [more]
FAD5A_DICDI4.704e-1149.15Delta(5) fatty acid desaturase A OS=Dictyostelium ... [more]
CYB5_BOROF4.704e-1144.05Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34005G08EF PostHarvC1 Citrus clementina cDNA clone C34005G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930283 ID=FC930283; Name=FC930283; organism=Citrus clementina; type=EST; length=684bp
GACGCTCCGAAGAAACACAGAGAGGGAAAAAATAAAAATAGAGATCTCAA
AAACCGAAAGCAAACCAAATCATCACATCCCTTGCTATTTCACTTTGAGC
AAAACTTGCGGGATTTTCTTGATTTGATTTTGCTTCCCAGGTGGCATAAC
CTATCTTCCCCCACAACACTTTCCAATTTTTCAATCTGCTGCCTTAATGG
AGGCCGAGAAAAAATACATAACGGCTGAAGAGCTTAGAACCCACAACAAG
GCAGAAGATTTGTGGATCTCTATACAGGGGAAAGTTTACGACGTTACAGA
ATGGGCAAAACAACATCCTGGCGGCGACGTTCCGCTCTTGAATTTGGCTG
GCCAAGATGTTACCGATGCGTTTATAGCGTATCATCCAGGAACCGCTTGG
CAATATCTTGATAAACTTTTTACAGGCTATTATGTTCAAGATTTCGAAGT
ATCTGAAATCTCAAAAGATTACAGGAGACTGTACATTGAGTTTGCCAAAC
AGGGTATGTTTGAAAAGAAACAACACGTGGCATCCTGTGCCCTTACATGT
GTAGCATTGATGTTTGTTGTTGTGGTTTATGGCGTTTTGTGCTGTGAGAG
CGTCTGGGCTCATTTGGGTTCAGGCATGTTGTTGGGGTTTCTTTGGATTC
AAGTGCTTATGTTGGTCACGATTCCGGGCATTAT
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