FC930304

Overview
NameFC930304
Unique NameFC930304
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14120 contig Ccv1_Contig14120:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930304 vs. ExPASy Swiss-Prot
Match: NOTUM_MOUSE (Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 43/133 (32.33%), Postives = 70/133 (52.63%), Query Frame = 3 
Query:  282 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSG 674
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SSK        +G+LS++ + NP ++N N + + YC    ++G     +  N   F G+ + Q V+ +L+ KG+  A+  +L+G
Sbjct:  108 CNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKSDKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAG 237
[Close]
BLAST of FC930304 vs. ExPASy Swiss-Prot
Match: NOTUM_HUMAN (Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 42/133 (31.58%), Postives = 72/133 (54.14%), Query Frame = 3 
Query:  282 CLDGSPPAYHFDKGFGAGINNWLVHIEGGGWCNNVTTCLERKKT--RLGSSKQMVKVVAFSGMLSNKQKFNPDFYNWNRIKVRYCDGASFTGDVEAVNPANNLHFRGARVFQAVMEDLMAKGMKNAQNAVLSG 674
            C DGSP  Y+  +  G+    WL+ +EGG +C N   C  R  T  RL SS+   +    +G+LS++ + NP ++N N + + YC    ++G   + +  N   F GA + Q V+ +L+ +G+  A+  +L+G
Sbjct:  101 CNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSG-ASSKSEKNEYAFMGALIIQEVVRELLGRGLSGAKVLLLAG 230
The following BLAST results are available for this feature:
BLAST of FC930304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NOTUM_MOUSE6.449e-1332.33Protein notum homolog OS=Mus musculus GN=Notum PE=... [more]
NOTUM_HUMAN8.423e-1331.58Protein notum homolog OS=Homo sapiens GN=NOTUM PE=... [more]
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Properties
Property NameValue
Genbank descriptionC34006A07EF PostHarvC1 Citrus clementina cDNA clone C34006A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930304 ID=FC930304; Name=FC930304; organism=Citrus clementina; type=EST; length=677bp
GGAACAAGAAGCTAGCTACATCCTTTGATCCTTTCTCCTTGAGCTCCCAA
AAAATTGCCATTACTATTTCTTCCCAATGCACTAACTTGGGCTCCTTTTG
CATACTCTTTAAACTAGTCCCATTTGCAGATAATTTTTTTTTTTGGCCTC
ATTTCAGAATGGTTGCTGCAAGAATGGGCCAATGGTTGAATCTTTTAGTA
TGTGCACTCATATTACTGAAAGCTGACGGCTTTAATGTAGGAATCACTTA
TGTTGAGAATGCTGTAGCGAAAGGAGCTGTTTGTTTGGATGGTAGCCCGC
CTGCTTACCATTTTGATAAGGGGTTTGGTGCTGGGATCAATAATTGGTTG
GTTCACATTGAGGGAGGAGGATGGTGCAACAATGTCACAACTTGTCTTGA
ACGTAAGAAAACCCGTTTAGGTTCATCTAAGCAAATGGTCAAGGTAGTTG
CTTTCTCTGGGATGCTGAGCAACAAGCAAAAATTTAACCCAGACTTCTAC
AATTGGAATAGAATCAAGGTTAGATACTGTGATGGTGCATCGTTTACTGG
AGATGTGGAGGCTGTCAATCCAGCAAATAACCTTCACTTCAGAGGAGCAA
GGGTTTTTCAAGCTGTCATGGAGGATCTAATGGCTAAAGGGATGAAAAAT
GCTCAAAATGCTGTTCTTTCTGGCTGC
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