FC930307

Overview
NameFC930307
Unique NameFC930307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9450 contig Ccv1_Contig9450:9..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSKP_SOLTU (Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.334e-79
Identity = 160/219 (73.06%), Postives = 178/219 (81.28%), Query Frame = 2
Query:   59 SSLVCSPLTAPLCISKKSSLATLKLGYISPITAARRLKQNLYKVSYKPCNSVVCKAVSV--KPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            +S + +PLT+ LC +K       K+      +          KV++    SVVCKAVSV  K  T IEGLNIAEDVTQLIG TPMVYLNTI KGCVANIAAKLEIMEPCCSVKDRIGFSMI DAE+KGLI+PGK++LVEPTSGNTGIGLAFIAAS+GYKLILTMPASMSLERRV+LKAFGAELVLTD AKGMKGAV KAEEILN+TP+AY+LQQFDNPA
Sbjct:    2 ASFINNPLTS-LCNTKSERNNLFKISLYEAQSLGFSKLNGSRKVAFP---SVVCKAVSVPTKSSTEIEGLNIAEDVTQLIGNTPMVYLNTIAKGCVANIAAKLEIMEPCCSVKDRIGFSMIVDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVLTDPAKGMKGAVSKAEEILNNTPDAYILQQFDNPA 216          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSKP_CAPAN (Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 7.428e-79
Identity = 151/169 (89.35%), Postives = 161/169 (95.27%), Query Frame = 2
Query:  209 SVVCKAVSV--KPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            SVVCKAVSV  K  T IEGLNIAEDVTQLIG TPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMI+DAE+KGLI+PGK++LVEPTSGNTGIGLAFIAAS+GYKLILTMPASMSLERRV+LKAFGAELVLTD AKGMKGAV KAEEILN+TP+AY+LQQFDNPA
Sbjct:   46 SVVCKAVSVQTKSPTEIEGLNIAEDVTQLIGNTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMISDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVLTDPAKGMKGAVSKAEEILNNTPDAYILQQFDNPA 214          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSKP_ARATH (Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=OASB PE=1 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 1.655e-78
Identity = 154/220 (70.00%), Postives = 181/220 (82.27%), Query Frame = 2
Query:   53 TSSSLVCSPLTAPLCISKKS-SLATLKLGYISPITAARRLKQNLYKVSYKPCNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            +SS+ + +PLT+     K S  L++L L   S   AA  +    + +  +  + VVCKAVS+KP+ G+EGLNIA++  QLIGKTPMVYLN +VKGCVA++AAKLEIMEPCCSVKDRIG+SMI DAE+KGLITPGKS+LVE TSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLL+AFGAELVLT+ AKGM GA+QKAEEIL  TPN+YMLQQFDNPA
Sbjct:    5 SSSAFLLNPLTSRHRPFKYSPELSSLSLS--SRKAAAFDVSSAAFTLKRQSRSDVVCKAVSIKPEAGVEGLNIADNAAQLIGKTPMVYLNNVVKGCVASVAAKLEIMEPCCSVKDRIGYSMITDAEEKGLITPGKSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLRAFGAELVLTEPAKGMTGAIQKAEEILKKTPNSYMLQQFDNPA 222          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSKM_ARATH (Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3)

HSP 1 Score: 285.804 bits (730), Expect = 1.549e-76
Identity = 155/242 (64.05%), Postives = 188/242 (77.69%), Query Frame = 2
Query:    2 TSVGHHS*FPQSSKTMVTSSSLVCSPLTAPLCISK------KSSLATLKLGYISPITAARRLKQNLYKVSYKPCNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            T +G+ S +   + T  +SS+L+ +PLT+    S          +++L     S  + A + +   +    +   SVVC+AV  K +TG +GLNIA++V+QLIGKTPMVYLN+I KGCVANIAAKLEIMEPCCSVKDRIG+SM+ DAEQKG I+PGKS+LVEPTSGNTGIGLAFIAAS+GY+LILTMPASMS+ERRVLLKAFGAELVLTD AKGM GAVQKAEEIL +TP+AYMLQQFDNPA
Sbjct:   23 TLLGNRSCYTSMAAT--SSSALLLNPLTSSSSSSTLRRFRCSPEISSLSFSSASDFSLAMKRQSRSFADGSERDPSVVCEAV--KRETGPDGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPA 260          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSKP_SPIOL (Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 6.507e-75
Identity = 147/209 (70.33%), Postives = 171/209 (81.82%), Query Frame = 2
Query:   83 TAPLCISKKSSLATLKLGYISPITAARRLKQNLYKVSYKPCNSVVCKAVSVKPQTGIEGLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            T+ L + +  +LA  ++G  S ++       N  KVS  P   + CKAVS+ P + IEGLNIAEDV+QLIGKTPMVYLN + KG VANIAAKLE MEPCCSVKDRIG+SMI DAEQKG+ITPGK+ LVEPTSGNTGIGLAFIAA++GYK+ LTMPASMS+ERRV+LKAFGAELVLTD AKGMKGAV+KAEEIL  TP++YMLQQFDNPA
Sbjct:   14 TSKLELREVKNLANFRVGPPSSLSC-----NNFKKVSSSP---ITCKAVSLSPPSTIEGLNIAEDVSQLIGKTPMVYLNNVSKGSVANIAAKLESMEPCCSVKDRIGYSMIDDAEQKGVITPGKTTLVEPTSGNTGIGLAFIAAARGYKITLTMPASMSMERRVILKAFGAELVLTDPAKGMKGAVEKAEEILKKTPDSYMLQQFDNPA 214          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.320e-64
Identity = 119/148 (80.41%), Postives = 137/148 (92.57%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            IA+DVT+LIGKTP+VYLNT+  GCVA +AAKLE MEPC SVKDRIGFSMI DAE+ GLITPG+S+L+EPTSGNTGIGLAFIAA+KGYKLI+TMPASMSLERR +L+AFGAEL+LTD AKGMKGAVQKAEEI + TPN+Y+LQQF+NPA
Sbjct:    8 IAKDVTELIGKTPLVYLNTVADGCVARVAAKLEGMEPCSSVKDRIGFSMITDAEKSGLITPGESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERRTILRAFGAELILTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPA 155          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.746e-63
Identity = 116/148 (78.38%), Postives = 136/148 (91.89%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            IA+DVT+LIG TP+VYLN +V GCVA +AAKLE+MEPC SVKDRIG+SMI+DAE KGLITPG+S+L+EPTSGNTGIGLAFIAA+KGY+LI+ MPASMSLERR +L+AFGAELVLTD A+GMKGAVQKAEEI   TPN+Y+LQQF+NPA
Sbjct:    8 IAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDAENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAFGAELVLTDPARGMKGAVQKAEEIKAKTPNSYILQQFENPA 155          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.171e-62
Identity = 114/148 (77.03%), Postives = 133/148 (89.86%), Query Frame = 2
Query:  266 IAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            IA+DVT+LIG TP+VYLN + +GCV  +AAKLE+MEPC SVKDRIGFSMI+DAEQKGLI PG+S+L+EPTSGNTG+GLAF AA+KGYKLI+TMPASMS+ERR++L AFG ELVLTD AKGMKGA+ KAEEIL  TPN YMLQQF+NPA
Sbjct:    5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEQKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPA 152          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.836e-62
Identity = 116/151 (76.82%), Postives = 134/151 (88.74%), Query Frame = 2
Query:  257 GLNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            G +IA DVT LIG TP+VYLN +V GC A IAAKLEIMEPC SVKDRIG+SMI DAE+KGLITPGKS+L+EPTSGNTGIGLAF+AA+KGYKLILTMPASMS+ERR++LKAFGAELVLTD   GMKGA+QKA+E+    PN+Y+LQQF+NPA
Sbjct:    5 GQSIASDVTALIGNTPLVYLNKVVDGCEAQIAAKLEIMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKAFGAELVLTDPLLGMKGAIQKADELAAKMPNSYILQQFENPA 155          
BLAST of FC930307 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.836e-62
Identity = 113/150 (75.33%), Postives = 134/150 (89.33%), Query Frame = 2
Query:  260 LNIAEDVTQLIGKTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMIADAEQKGLITPGKSILVEPTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLKAFGAELVLTDSAKGMKGAVQKAEEILNSTPNAYMLQQFDNPA 709
            + IA DVT+LIG TP+VYLN++ +GCV  +AAKLE+MEPC SVKDRIGFSMI+DAE+KGLI PG+S+L+EPTSGNTG+GLAF AA+KGYKLI+TMPASMS+ERR++L AFG ELVLTD AKGMKGA+ KAEEIL  TPN YMLQQF+NPA
Sbjct:    5 IGIANDVTELIGNTPLVYLNSVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSIERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPA 154          
The following BLAST results are available for this feature:
BLAST of FC930307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSKP_SOLTU3.334e-7973.06Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_CAPAN7.428e-7989.35Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_ARATH1.655e-7870.00Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKM_ARATH1.549e-7664.05Cysteine synthase, mitochondrial OS=Arabidopsis th... [more]
CYSKP_SPIOL6.507e-7570.33Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK_SPIOL2.320e-6480.41Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSK_CITLA9.746e-6378.38Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK1_BRAJU2.171e-6277.03Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK2_ORYSJ2.836e-6276.82Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK2_BRAJU2.836e-6275.33Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34006A10EF PostHarvC1 Citrus clementina cDNA clone C34006A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930307 ID=FC930307; Name=FC930307; organism=Citrus clementina; type=EST; length=710bp
GACATCAGTTGGTCATCACAGTTAGTTCCCACAAAGTTCCAAAACAATGG
TCACTTCGTCTTCTCTGGTGTGCAGTCCGTTGACTGCTCCTCTCTGCATC
TCCAAGAAATCATCATTGGCCACTCTGAAACTGGGCTACATTAGCCCCAT
AACAGCAGCTCGAAGATTGAAGCAGAATTTGTACAAGGTCTCTTACAAAC
CCTGCAACTCTGTTGTGTGCAAGGCCGTCTCTGTGAAGCCGCAGACTGGG
ATTGAAGGTCTCAACATTGCTGAAGATGTCACTCAGCTTATTGGGAAGAC
GCCAATGGTATACCTGAATACTATTGTCAAGGGGTGTGTTGCAAACATTG
CTGCCAAGCTTGAAATCATGGAACCATGTTGTAGTGTTAAGGACAGGATA
GGTTTCAGTATGATAGCTGATGCCGAGCAAAAAGGACTAATAACGCCTGG
AAAGAGTATTCTTGTAGAGCCCACTAGTGGAAACACTGGAATTGGCCTTG
CTTTCATAGCTGCTTCGAAAGGATATAAGCTCATTTTGACTATGCCAGCC
TCAATGAGCTTGGAAAGGAGAGTTCTTCTGAAAGCATTTGGAGCTGAGCT
TGTATTAACTGATTCAGCAAAAGGCATGAAGGGGGCTGTCCAGAAAGCTG
AAGAAATTTTGAATAGCACACCTAATGCATATATGCTTCAGCAATTTGAC
AATCCTGCTA
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