FC930314

Overview
NameFC930314
Unique NameFC930314
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15137 contig Ccv1_Contig15137:1..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930314 vs. ExPASy Swiss-Prot
Match: CCL11_ARATH (Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=2 SV=2)

HSP 1 Score: 371.703 bits (953), Expect = 1.884e-102
Identity = 181/204 (88.73%), Postives = 194/204 (95.10%), Query Frame = 3
Query:   54 MIYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRXQSEVVACGVVYAA 665
            MIYTAIDNFYL+DEQLK SPSRKDGIDE TE +LRIYGCDLIQE GILLKLPQAVMATGQVLF RFYCK+S A+FDVKIVAAS VWLASKLEE+P+KARQVIIVFHRMECRRE LP+EHLD+++KKFSELK+E+SRTERHILKEMGFVCHVEHPHKFISNYLATLETP ELRQEAWNLANDSLRTTLCVR +SEVVACGVVYAA
Sbjct:    1 MIYTAIDNFYLSDEQLKASPSRKDGIDETTEISLRIYGCDLIQEGGILLKLPQAVMATGQVLFQRFYCKKSLAKFDVKIVAASCVWLASKLEENPKKARQVIIVFHRMECRRENLPLEHLDMYAKKFSELKVELSRTERHILKEMGFVCHVEHPHKFISNYLATLETPPELRQEAWNLANDSLRTTLCVRFRSEVVACGVVYAA 204          
BLAST of FC930314 vs. ExPASy Swiss-Prot
Match: CCL11_ORYSJ (Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYCL1-1 PE=2 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.070e-97
Identity = 172/204 (84.31%), Postives = 188/204 (92.16%), Query Frame = 3
Query:   54 MIYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLRTTLCVRXQSEVVACGVVYAA 665
            MIYTAID FYLTDEQL+DSPSRKDGIDEATET LR+YGCDLIQESGILLKLPQAVMAT QVLFHRFYCK+SF RF VK VAAS VWLA KLEESPR+++ +IIVFHRMECRRE +PIEHLD+FSKK+S+LK ++ RTERH+LKEMGF+CHVEHPHKFISNYLATLE P EL QEAWNLANDSLRTTLCVR +SEVVACGVVYAA
Sbjct:    1 MIYTAIDTFYLTDEQLRDSPSRKDGIDEATETALRVYGCDLIQESGILLKLPQAVMATAQVLFHRFYCKKSFVRFSVKRVAASCVWLAGKLEESPRRSKHIIIVFHRMECRRENVPIEHLDVFSKKYSDLKHDLVRTERHLLKEMGFICHVEHPHKFISNYLATLEAP-ELTQEAWNLANDSLRTTLCVRFKSEVVACGVVYAA 203          
BLAST of FC930314 vs. ExPASy Swiss-Prot
Match: CCNL1_RAT (Cyclin-L1 OS=Rattus norvegicus GN=Ccnl1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.766e-45
Identity = 96/201 (47.76%), Postives = 129/201 (64.18%), Query Frame = 3
Query:   69 IDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE--LRQEAWNLANDSLRTTLCVRXQSEVVACGVVYAA 665
            ID+  + +E+L  +PS +DG+D  +ET LRI GC+LIQ +GILL+LPQ  MATGQVLFHRF+  +SF +   +IVA + + LASK+EE+PR+ R VI VFH +   R G       +  + +   K ++ + ER +LKE+GF  HV+HPHK I  YL  LE      L Q AWN  NDSLRT + VR Q E +AC  +Y A
Sbjct:   55 IDHSVIPEERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLR-GKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRTNVFVRFQPETIACACIYLA 254          
BLAST of FC930314 vs. ExPASy Swiss-Prot
Match: CCNL1_MOUSE (Cyclin-L1 OS=Mus musculus GN=Ccnl1 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.766e-45
Identity = 96/201 (47.76%), Postives = 129/201 (64.18%), Query Frame = 3
Query:   69 IDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE--LRQEAWNLANDSLRTTLCVRXQSEVVACGVVYAA 665
            ID+  + +E+L  +PS +DG+D  +ET LRI GC+LIQ +GILL+LPQ  MATGQVLFHRF+  +SF +   +IVA + + LASK+EE+PR+ R VI VFH +   R G       +  + +   K ++ + ER +LKE+GF  HV+HPHK I  YL  LE      L Q AWN  NDSLRT + VR Q E +AC  +Y A
Sbjct:   60 IDHSLIPEERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLR-GKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRTNVFVRFQPETIACACIYLA 259          
BLAST of FC930314 vs. ExPASy Swiss-Prot
Match: CCNL1_HUMAN (Cyclin-L1 OS=Homo sapiens GN=CCNL1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.766e-45
Identity = 96/201 (47.76%), Postives = 129/201 (64.18%), Query Frame = 3
Query:   69 IDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE--LRQEAWNLANDSLRTTLCVRXQSEVVACGVVYAA 665
            ID+  + +E+L  +PS +DG+D  +ET LRI GC+LIQ +GILL+LPQ  MATGQVLFHRF+  +SF +   +IVA + + LASK+EE+PR+ R VI VFH +   R G       +  + +   K ++ + ER +LKE+GF  HV+HPHK I  YL  LE      L Q AWN  NDSLRT + VR Q E +AC  +Y A
Sbjct:   54 IDHSLIPEERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLR-GKRTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRTNVFVRFQPETIACACIYLA 253          
BLAST of FC930314 vs. ExPASy Swiss-Prot
Match: CCNL1_DANRE (Cyclin-L1 OS=Danio rerio GN=ccnl1 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.612e-45
Identity = 95/207 (45.89%), Postives = 133/207 (64.25%), Query Frame = 3
Query:   57 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRME--CRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE--LRQEAWNLANDSLRTTLCVRXQSEVVACGVVYAA 665
            ++ AIDN  + +++L  +PS  DG+D  TET LRI GC+ IQ +GILL+LPQ  MATGQV+F RF+  +SF + + +IVA + V LASK+EESPR+ R VI VFH ++    ++  P+    +  + +   K ++ + ER ILKE+GF  HV+HPHK I  YL  LE      L Q AWN  ND+LRT+  VR + E +AC  +Y A
Sbjct:   30 VFLAIDNSIIPEDRLSTTPSMLDGLDHETETDLRILGCERIQSAGILLRLPQVAMATGQVIFQRFFFSKSFVKHNFEIVAMACVNLASKIEESPRRVRDVINVFHHLKQGKGKKSTPL----ILDQNYINTKNQVIKAERRILKELGFCVHVKHPHKIIVMYLQVLECEKNQMLVQTAWNYMNDALRTSAFVRFEPETIACACIYLA 232          
BLAST of FC930314 vs. ExPASy Swiss-Prot
Match: CCNL2_MOUSE (Cyclin-L2 OS=Mus musculus GN=Ccnl2 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.047e-45
Identity = 96/205 (46.83%), Postives = 132/205 (64.39%), Query Frame = 3
Query:   57 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETP--LELRQEAWNLANDSLRTTLCVRXQSEVVACGVVYAA 665
            +   ++N  L D++L+ +PS   G+D  TET LR+ GC+LIQ +GILL+LPQ  MATGQVLF RF+  +SF +  ++ V+ + V LASK+EE+PR+ R VI VFHR+   RE      L +  +++  LK ++ + ER +LKE+GF  HV+HPHK I  YL  LE      L Q AWN  NDSLRT + VR Q E +AC  +Y A
Sbjct:   43 VLITLENCLLPDDKLRFTPSMSSGLDVDTETGLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRHLREKKKPVPL-VLDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTAWNYMNDSLRTDVFVRFQPESIACACIYLA 246          
BLAST of FC930314 vs. ExPASy Swiss-Prot
Match: CCNL2_RAT (Cyclin-L2 OS=Rattus norvegicus GN=Ccnl2 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.051e-44
Identity = 96/205 (46.83%), Postives = 132/205 (64.39%), Query Frame = 3
Query:   57 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETP--LELRQEAWNLANDSLRTTLCVRXQSEVVACGVVYAA 665
            +   ++N  L D++L+ +PS   G+D  TET LR+ GC+LIQ +GILL+LPQ  MATGQVLF RF+  +SF +  ++ V+ + V LASK+EE+PR+ R VI VFHR+   RE      L +  +++  LK ++ + ER +LKE+GF  HV+HPHK I  YL  LE      L Q AWN  NDSLRT + VR Q E +AC  +Y A
Sbjct:   43 VLITLENCLLPDDKLRFTPSMSSGLDIDTETGLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRHLREKKKPVPL-VLDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTAWNYMNDSLRTDVFVRFQPESIACACIYLA 246          
BLAST of FC930314 vs. ExPASy Swiss-Prot
Match: CCNL2_HUMAN (Cyclin-L2 OS=Homo sapiens GN=CCNL2 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.793e-44
Identity = 95/206 (46.12%), Postives = 133/206 (64.56%), Query Frame = 3
Query:   57 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRM-ECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETP--LELRQEAWNLANDSLRTTLCVRXQSEVVACGVVYAA 665
            +   ++N  L D++L+ +PS   G+D  TET LR+ GC+LIQ +GILL+LPQ  MATGQVLF RF+  +SF +  ++ V+ + V LASK+EE+PR+ R VI VFHR+ + R +  P+    L  + +  LK ++ + ER +LKE+GF  HV+HPHK I  YL  LE      L Q +WN  NDSLRT + VR Q E +AC  +Y A
Sbjct:   45 VLITLENCLLPDDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPL--LLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWNYMNDSLRTDVFVRFQPESIACACIYLA 248          
BLAST of FC930314 vs. ExPASy Swiss-Prot
Match: CCNL1_XENLA (Cyclin-L1 OS=Xenopus laevis GN=ccnl1 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.793e-44
Identity = 95/208 (45.67%), Postives = 129/208 (62.02%), Query Frame = 3
Query:   57 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFH---RMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE--LRQEAWNLANDSLRTTLCVRXQSEVVACGVVYAA 665
            +Y  ID   + +E+L  +PS  DG+D  TET LRI GC+LIQ +GILL+LPQ  MATGQVLFHRF+  +SF +   +I+A + + LASK+EE+PR+ R VI V H   ++  +R   P+    +  + +   K  + + ER ILKE+GF  HV+HPHK I  YL  LE      L Q AWN  ND LRT + VR  +E +AC  +Y A
Sbjct:   30 VYLTIDYSLIPEERLSPTPSMSDGLDLNTETDLRILGCELIQSAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIIAMACINLASKIEEAPRRIRDVINVCHHLRQIRAKRTPSPL----ILDQSYINTKNHVIKAERRILKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDCLRTNVFVRFDAETIACACIYLA 233          
The following BLAST results are available for this feature:
BLAST of FC930314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CCL11_ARATH1.884e-10288.73Cyclin-L1-1 OS=Arabidopsis thaliana GN=CYCL1-1 PE=... [more]
CCL11_ORYSJ1.070e-9784.31Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCNL1_RAT2.766e-4547.76Cyclin-L1 OS=Rattus norvegicus GN=Ccnl1 PE=1 SV=1[more]
CCNL1_MOUSE2.766e-4547.76Cyclin-L1 OS=Mus musculus GN=Ccnl1 PE=2 SV=1[more]
CCNL1_HUMAN2.766e-4547.76Cyclin-L1 OS=Homo sapiens GN=CCNL1 PE=1 SV=1[more]
CCNL1_DANRE3.612e-4545.89Cyclin-L1 OS=Danio rerio GN=ccnl1 PE=1 SV=1[more]
CCNL2_MOUSE8.047e-4546.83Cyclin-L2 OS=Mus musculus GN=Ccnl2 PE=1 SV=1[more]
CCNL2_RAT1.051e-4446.83Cyclin-L2 OS=Rattus norvegicus GN=Ccnl2 PE=2 SV=2[more]
CCNL2_HUMAN1.793e-4446.12Cyclin-L2 OS=Homo sapiens GN=CCNL2 PE=1 SV=1[more]
CCNL1_XENLA1.793e-4445.67Cyclin-L1 OS=Xenopus laevis GN=ccnl1 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34006B05EF PostHarvC1 Citrus clementina cDNA clone C34006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930314 ID=FC930314; Name=FC930314; organism=Citrus clementina; type=EST; length=667bp
TGTTGCCGAGGCAAATCCTCCAGGTAGTTGAAAGTGAGGGATCTTGAGCA
AGAATGATTTACACGGCAATTGATAATTTTTACCTAACAGATGAGCAGCT
AAAGGACTCACCGTCTAGAAAAGATGGCATTGATGAAGCAACAGAAACCA
CTTTGAGAATCTATGGCTGTGACCTCATTCAAGAAAGTGGAATTTTGCTT
AAATTACCGCAAGCTGTAATGGCTACTGGTCAGGTTTTATTCCATCGTTT
CTATTGCAAGAGATCATTTGCTCGTTTTGATGTGAAGATAGTGGCTGCTA
GTTCCGTATGGCTTGCATCAAAGCTGGAGGAGAGCCCTCGGAAAGCAAGG
CAAGTAATCATTGTTTTCCATAGAATGGAATGCAGAAGGGAGGGCTTACC
CATAGAGCATTTGGATTTGTTTTCAAAGAAATTTTCAGAATTGAAAATGG
AAATGAGCAGAACAGAAAGACATATATTGAAAGAGATGGGCTTTGTTTGT
CACGTTGAACACCCTCACAAATTCATATCAAACTACCTTGCCACCCTTGA
GACACCTCTAGAATTGAGACAGGAAGCTTGGAATCTAGCAAATGATAGTC
TGCGCACAACTTTGTGTGTCCGATTNCAGAGCGAGGTCGTGGCTTGTGGG
GTTGTATATGCTGCTGC
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