FC930315

Overview
NameFC930315
Unique NameFC930315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15138 contig Ccv1_Contig15138:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.460e-34
Identity = 81/118 (68.64%), Postives = 88/118 (74.58%), Query Frame = 3
Query:  321 SLTFVPSAIATPNTVLSEEAFKRLGEFSENSGSLDGSVSDEDYESQTVSDEDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIPNTQRLTE 674
            S   VPSA+ATPN+VLSEEAFK LG    +   LDG     D  +    D +ELAISKL LP RL ESLEKRGITHLFPIQRAV  PALQGRD+IARAKTGTGKTLAFGIP  +RLTE
Sbjct:   54 SSLLVPSAVATPNSVLSEEAFKSLGLSDHDEYDLDG-----DNNNVEADDGEELAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTE 166          
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.083e-29
Identity = 71/115 (61.74%), Postives = 84/115 (73.04%), Query Frame = 3
Query:  342 AIATPNTVLSEEAFKRLGEFSENSGSLDGSVSDEDYESQTVS----DEDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIPNTQRLTE 674
            AIA+PN+VLSE AFKRL    E     +G+   ++   + V     DEDELAI++LGLP +L  +LEKRGITHLFPIQRAV  PAL GRDLIARAKTGTGKTLAFGIP  ++L E
Sbjct:   54 AIASPNSVLSEHAFKRLQLSDEEEEEEEGAYGSDEEGVEAVGGGEGDEDELAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLME 168          
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.059e-16
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 3
Query:  471 EDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIP 653
            E+ L ++KLG+  ++   L  RGIT LFPIQRAV EPA+QG+D++ RAKTGTGKTLAFGIP
Sbjct:   95 EEGLEVAKLGISPKIVSQLASRGITKLFPIQRAVLEPAMQGKDMVGRAKTGTGKTLAFGIP 155          
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 41/75 (54.67%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  462 VSDEDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIPNTQRLTEGYEQ 686
            V  +D L +++LG+   + E L  RGIT LFPIQRAV +PA+QG+D+I RA+TGTGKTLAFGIP   R+    E+
Sbjct:   78 VGGDDGLEVARLGISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEK 152          
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 53/137 (38.69%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  243 ALIATSSVAKPLXXXXXXXXXXXXKQSLTFVPSAIATPNTVLSEEAFKRLGEFSENSGSLDGSVSDEDYESQTVSDEDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIP 653
            ALI +S V                   L F  S ++     +SE + +R+G+ SE+ G                   D LAIS+LG+   + ++L  +GI  LFPIQ+AV EPA++GRD+I RA+TGTGKTLAFGIP
Sbjct:   44 ALIGSSDVKAGFPFGVEAKGIHFQSGPLDFRASMVSQAGFAISESSERRVGD-SESVGG------------------DGLAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIP 161          
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.983e-15
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 3
Query:  423 DGSVSDEDYESQTVSDEDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIP 653
            DG + D +    +    D LAI+ LG+   + ++L+ RGI  LFPIQ+AV EPA++GRD+I RA+TGTGKTLAFGIP
Sbjct:   98 DGGIGDSESVGSS-GGGDGLAIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIP 173          
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: DDX50_HUMAN (ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 3
Query:  402 SENSGSLDGSV---SDEDYESQTVSDEDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIPNTQRLTEGYE 683
            S+   SLD S    SD   E     ++ E A S   +     + L+ RG+T+LFPIQ   F P  +G+DLIA+A+TGTGKT +F IP  +RL    E
Sbjct:  108 SKRVSSLDTSTHKSSDNKLEETLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQE 204          
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: DDX50_MOUSE (ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 3
Query:  411 SGSLDGSVSDEDYESQTVSDEDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIPNTQRLTEGYE 683
            S S +   S +  E     ++ E A S   +     + L+ RG+T+LFPIQ   F P  +G+DLIA+A+TGTGKT +F IP  +RL    E
Sbjct:  111 SSSENSHKSSDKAEETLTREQKEGAFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQE 201          
BLAST of FC930315 vs. ExPASy Swiss-Prot
Match: DDX21_MOUSE (Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 3
Query:  372 EEAFKRLGEFSENSGSLDGSVSDEDYESQTVSDEDELAISKLGLPGRLAESLEKRGITHLFPIQRAVFEPALQGRDLIARAKTGTGKTLAFGIPNTQRLTEGYEQ 686
            ++   +  E   NS    G  S  + E +   ++ E A S   +     + L+ RG+  LFPIQ   F     G+DLIA+A+TGTGKT +F IP  ++L  G ++
Sbjct:  222 KDGLSQPSEPKSNSSDAPGEESSSETEKEIPVEQKEGAFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQE 326          
The following BLAST results are available for this feature:
BLAST of FC930315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RH3_ARATH1.460e-3468.64DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]
RH3_ORYSJ1.083e-2961.74DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sat... [more]
RH9_ORYSJ3.059e-1663.93DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sat... [more]
RH53_ORYSJ3.995e-1654.67DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sa... [more]
RH53_ARATH3.995e-1638.69DEAD-box ATP-dependent RNA helicase 53 OS=Arabidop... [more]
RH9_ARATH1.983e-1553.25DEAD-box ATP-dependent RNA helicase 9 OS=Arabidops... [more]
DDX50_HUMAN7.798e-1241.24ATP-dependent RNA helicase DDX50 OS=Homo sapiens G... [more]
DDX50_MOUSE2.963e-1139.56ATP-dependent RNA helicase DDX50 OS=Mus musculus G... [more]
DDX21_MOUSE6.601e-1133.33Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 ... [more]
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Properties
Property NameValue
Genbank descriptionC34006B06EF PostHarvC1 Citrus clementina cDNA clone C34006B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930315 ID=FC930315; Name=FC930315; organism=Citrus clementina; type=EST; length=715bp
GAGGTGGAGTTTTATAAGGCCATTCATTTTCAGAAGGCGCCTTATCTTCA
TCTCTCTCATTTCTCCTCGACGCTGCTGTTCCCAAATCCTCTCTTCGTTA
CACAAGCGACATGTCGTCCTCCACCGTATTAGGAGTGTCATCCACTCCAT
ATCTAGAAGTGTCCAGTAAAAGAACAACGCCACCAGCAACGACGTCGTCA
GCGTTATTGTCTTTGCCTTTAGCCGACAAGTCCCACTTCAACGCCTTAAT
AGCAACCTCGTCGGTAGCAAAGCCGTTGGGTTTCAGGAACGGCGGTGGTA
GTGGGTTCGGGTTCAAACAGAGCCTTACATTTGTTCCTTCTGCAATTGCT
ACTCCCAATACAGTCCTTAGTGAAGAAGCCTTCAAAAGACTCGGCGAATT
CTCTGAGAATTCTGGTTCTCTTGACGGCAGCGTCAGCGACGAAGATTATG
AGTCACAAACTGTGTCTGATGAAGACGAACTCGCCATTTCTAAACTGGGT
TTGCCTGGCCGTCTTGCTGAATCCCTCGAGAAGCGTGGCATTACTCACCT
CTTCCCCATTCAGAGGGCTGTTTTCGAGCCGGCTTTGCAAGGTAGAGACT
TGATAGCTCGTGCTAAAACTGGGACTGGGAAGACATTAGCTTTTGGCATC
CCAAATACTCAACGCCTTACTGAGGGGTATGAACAAGCATATCTCTCANG
CGCAGTCGTCTTCCT
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