FC930318

Overview
NameFC930318
Unique NameFC930318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930318_ssr58 microsatellite FC930318_ssr58:58..75. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC930318 vs. ExPASy Swiss-Prot
Match: STC_RICCO (Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.522e-67
Identity = 129/193 (66.84%), Postives = 146/193 (75.65%), Query Frame = 1
Query:  136 MPAVGGFDK--GNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVFDYF 708
            MPAVGG     GN K YPGNLT YV VTC+VAAMGGLIFGYDIGISGGVTSM SFLKKFFPSVYRK++A+ES+N YC+YDS+TLTMFT                +TR+FGRKLSM                   +WMLI+GR+LLGFGIGFANQSVPLYLSEMAPY++RGALNIGFQLSIT+GIL+ANV +YF
Sbjct:    1 MPAVGGIPPSGGNRKVYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFFPSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGVLFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVANVLNYF 193          
BLAST of FC930318 vs. ExPASy Swiss-Prot
Match: STP1_ARATH (Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 2.098e-65
Identity = 128/192 (66.67%), Postives = 144/192 (75.00%), Query Frame = 1
Query:  136 MPAVGGFDKGNG-KEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVFDYF 708
            MPA GGF  G+G K YPG LTP+VL TC+VAAMGGLIFGYDIGISGGVTSMPSFLK+FFPSVYRKQQ + STN YC+YDS TLTMFT                VTR+FGR+LSM                   +WMLIVGR+LLGFGIGFANQ+VPLYLSEMAPY++RGALNIGFQLSIT+GIL+A V +YF
Sbjct:    1 MPA-GGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYF 191          
BLAST of FC930318 vs. ExPASy Swiss-Prot
Match: STP12_ARATH (Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.466e-60
Identity = 118/191 (61.78%), Postives = 136/191 (71.20%), Query Frame = 1
Query:  136 MPAVGGFDKGNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVFDYF 708
            MP+VG       KEYPG LT YV VTCIVAAMGGLIFGYDIGISGGVT+M SF +KFFPSVY KQ+ +  +N YC++DS +LT+FT                VTRQFGRK+SM                   +WMLIVGRLLLGFGIGF NQSVPLYLSEMAPY++RGALNIGFQLSIT+GIL+ANV ++F
Sbjct:    1 MPSVGIVIGDGKKEYPGKLTLYVTVTCIVAAMGGLIFGYDIGISGGVTTMDSFQQKFFPSVYEKQKKDHDSNQYCRFDSVSLTLFTSSLYLAALCSSLVASYVTRQFGRKISMLLGGVLFCAGALLNGFATAVWMLIVGRLLLGFGIGFTNQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVANVLNFF 191          
BLAST of FC930318 vs. ExPASy Swiss-Prot
Match: STP11_ARATH (Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.366e-48
Identity = 99/184 (53.80%), Postives = 120/184 (65.22%), Query Frame = 1
Query:  157 DKGNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNL-YCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVFDY 705
            + G+G +Y G +T +V++TCIVAAMGGL+FGYDIGISGGV SM  FL KFFP V R+ Q        YCKYD+E LT+FT                +TR FGRK+SM                   + MLI+GRL LG G+GFANQSVPLYLSEMAP + RGALNIGFQL+IT+GIL AN+ +Y
Sbjct:    9 ESGHGGDYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANIVNY 192          
BLAST of FC930318 vs. ExPASy Swiss-Prot
Match: STP9_ARATH (Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.577e-47
Identity = 94/181 (51.93%), Postives = 118/181 (65.19%), Query Frame = 1
Query:  163 GNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVFDY 705
            G G  Y G +T +V++TCIVAAMGGL+FGYD+GISGGVTSM  FL KFFP V ++         YCK+D++ L +FT                VTR++GRK+SM                   + MLIVGRLLLG G+GFANQS P+YLSEMAP + RGALNIGFQ++IT+GILIAN+ +Y
Sbjct:   12 GGGNSYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINY 192          
BLAST of FC930318 vs. ExPASy Swiss-Prot
Match: STP10_ARATH (Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.181e-46
Identity = 91/181 (50.28%), Postives = 119/181 (65.75%), Query Frame = 1
Query:  163 GNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVFDY 705
            G G+ Y G +T +V++TCIVAAMGGL+FGYD+GISGGVTSM  FL KFFP V  + +  +    YCK+D++ L +FT                +TR+ GRK+SM                   + MLI+GRLLLG G+GFANQS P+YLSEMAP + RGALNIGFQ++IT+GIL+AN+ +Y
Sbjct:   12 GGGRSYEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINY 192          
BLAST of FC930318 vs. ExPASy Swiss-Prot
Match: HEX6_RICCO (Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.412e-45
Identity = 93/179 (51.96%), Postives = 119/179 (66.48%), Query Frame = 1
Query:  169 GKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVFDY 705
            G +Y G +T +V ++C++AAMGG+IFGYDIG+SGGVTSM  FLKKFFP VYRK + +   + YCK+DS+ LT FT                VTR FGRK S+    X    X         ++MLI GR+LLG G+GFANQ+VPLYLSEMAP R+RGA+N GFQ S+ +G L AN+ +Y
Sbjct:   11 GGQYNGRMTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALSANLINY 189          
BLAST of FC930318 vs. ExPASy Swiss-Prot
Match: STP13_ARATH (Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 5.940e-44
Identity = 92/188 (48.94%), Postives = 120/188 (63.83%), Query Frame = 1
Query:  148 GGF-DKGNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQAN-ESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVFDY 705
            GGF    NG E+   +TP V+++CI+AA GGL+FGYD+G+SGGVTSMP FL+KFFP VYRK  A  +  + YCKYD++ L +FT                 TR  GR+L+M                   + MLI GR+LLG G+GFANQ+VPL+LSE+AP R RG LNI FQL++T+GIL AN+ +Y
Sbjct:    4 GGFATSANGVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNY 191          
BLAST of FC930318 vs. ExPASy Swiss-Prot
Match: STP8_ARATH (Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.323e-43
Identity = 92/183 (50.27%), Postives = 118/183 (64.48%), Query Frame = 1
Query:  163 GNGKEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVY-RKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVFDYF 708
            GN K +   +T YV +  I+AA+GGLIFGYDIGISGGVT+M  FLK+FFPSVY RK+ A+E  N YCKYD++ L +FT                   + GR+ +M                   I+MLI+GR+LLGFG+GF NQ+VPL+LSE+AP R RG LNI FQL +T+GILIAN+ +YF
Sbjct:    9 GNSKSFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKKHAHE--NNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLAAGAVNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGILIANIVNYF 189          
BLAST of FC930318 vs. ExPASy Swiss-Prot
Match: STP4_ARATH (Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.568e-43
Identity = 89/179 (49.72%), Postives = 113/179 (63.13%), Query Frame = 1
Query:  172 KEYPGNLTPYVLVTCIVAAMGGLIFGYDIGISGGVTSMPSFLKKFFPSVYRKQQANESTNLYCKYDSETLTMFTXXXXXXXXXXXXXXXRVTRQFGRKLSMXXXXXXXXXXXXXXXXXXXIWMLIVGRLLLGFGIGFANQSVPLYLSEMAPYRFRGALNIGFQLSITVGILIANVFDYF 708
            + Y   LTP V VTC + A GGLIFGYD+GISGGVTSM  FL++FFP VY+K ++    N YC++DS+ LT+FT                +TR FGRK SM                   I ML++GR+LLGFG+GFANQSVP+YLSEMAP   RGA N GFQ++I  GI++A + +YF
Sbjct:   13 RNYNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPYVYKKMKSAHE-NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFGIVVATIINYF 190          
The following BLAST results are available for this feature:
BLAST of FC930318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
STC_RICCO6.522e-6766.84Sugar carrier protein C OS=Ricinus communis GN=STC... [more]
STP1_ARATH2.098e-6566.67Sugar transport protein 1 OS=Arabidopsis thaliana ... [more]
STP12_ARATH3.466e-6061.78Sugar transport protein 12 OS=Arabidopsis thaliana... [more]
STP11_ARATH1.366e-4853.80Sugar transport protein 11 OS=Arabidopsis thaliana... [more]
STP9_ARATH2.577e-4751.93Sugar transport protein 9 OS=Arabidopsis thaliana ... [more]
STP10_ARATH2.181e-4650.28Sugar transport protein 10 OS=Arabidopsis thaliana... [more]
HEX6_RICCO2.412e-4551.96Hexose carrier protein HEX6 OS=Ricinus communis GN... [more]
STP13_ARATH5.940e-4448.94Sugar transport protein 13 OS=Arabidopsis thaliana... [more]
STP8_ARATH1.323e-4350.27Sugar transport protein 8 OS=Arabidopsis thaliana ... [more]
STP4_ARATH6.568e-4349.72Sugar transport protein 4 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC34006B09EF PostHarvC1 Citrus clementina cDNA clone C34006B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930318 ID=FC930318; Name=FC930318; organism=Citrus clementina; type=EST; length=708bp
GGTATCTTCTTTCTTTATTGCCTGCTTACTCTTTAGTCTCCAATTTTCTT
GTTTATTTTCTTCTTCTTCTTCTTCTCCGTGTCATCGTTTCTTTATCTTC
TTAGAATCAAGAAAAAAAAGGAAAAGGCTGAAAAAATGCCTGCTGTTGGA
GGATTTGATAAGGGTAACGGGAAAGAGTACCCCGGAAACCTCACCCCATA
CGTGTTAGTAACATGTATTGTTGCTGCCATGGGTGGCCTCATCTTTGGTT
ATGATATTGGGATTTCAGGTGGTGTGACCTCAATGCCTTCATTTTTGAAG
AAGTTTTTCCCGTCGGTGTACAGGAAGCAACAGGCGAACGAGTCAACGAA
TCTGTACTGTAAGTATGACAGTGAGACGTTGACTATGTTCACGTCGTCGC
TTTACTTGGCTGCTCTATTATCATCACTGGTGGCGTCAAGGGTGACGAGA
CAATTCGGAAGAAAACTGTCTATGTTTTTCGGCGGTATCCTGTTTCTTGC
CGGTGCCTTGCTCAATGGCTTCGCCCAAGCCATTTGGATGCTTATTGTTG
GCCGACTTTTGCTCGGTTTCGGCATCGGTTTCGCTAACCAGTCCGTGCCA
CTCTACCTCTCTGAGATGGCTCCATACAGATTCAGAGGTGCTTTGAACAT
TGGGTTTCAGTTATCAATCACAGTTGGAATTCTTATAGCAAATGTGTTTG
ACTACTTC
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