FC930329

Overview
NameFC930329
Unique NameFC930329
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15142 contig Ccv1_Contig15142:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.369e-44
Identity = 96/200 (48.00%), Postives = 111/200 (55.50%), Query Frame = 2
Query:  146 SDYAVLDSVRQHLLGEXXXXXXXXXXXXXXXN-----GAPPTYFRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQXXXXXXXXXXXXXRGAPAPT-----------VVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFPPRI 697
            SDYA L+S+R+HLLGE               +        P Y R+ SFS+LYPC T++WGDLPL+ENDSEDMLV+  L DA   GW P    ++ DR                    P            V  ++GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET              MRGSRALLNFP R+
Sbjct:    9 SDYAFLESIRRHLLGESEPILSESTASSVTQSCVTGQSIKPVYGRNPSFSKLYPCFTESWGDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 208          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.035e-40
Identity = 81/153 (52.94%), Postives = 100/153 (65.36%), Query Frame = 2
Query:  251 PTYFRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQXXXXXXXXXXXXXRGAPAPTVVPS----RGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFPPRI 697
            P Y RSSSFS L PCLT++WGDLPL+ NDSEDM+++ FL+DA ++GW P    +E  + +                  PTV P+    +G+HYRGVRQRPWGKFAAEIRDPAKNGARVWLGT+E+              MRG++ALLNFP RI
Sbjct:   18 PVYCRSSSFSSLMPCLTESWGDLPLKVNDSEDMVIYGFLQDAFSIGWTPSNLTSEEVKLEPREEIEPAMST---SVSPPTVAPAALQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRI 167          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.263e-39
Identity = 84/155 (54.19%), Postives = 97/155 (62.58%), Query Frame = 2
Query:  251 PTYFRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQXXXXXXXXXXXXXRGAP------APTVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFPPRI 697
            P Y R+SSFS L PCLTD WGDLPL+ +DSEDM+++  L DALT GW P    +   + +               AP      A  VVP +G+HYRGVRQRPWGKFAAEIRDPAKNGARVWLGT+ET              MRGS+ALLNFP RI
Sbjct:   10 PVYHRTSSFSSLMPCLTDTWGDLPLKVDDSEDMVIYGLLSDALTTGWTPFNLTSTEIKAEPREEIEPATSPVPSVAPPAETTTAQAVVP-KGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRI 163          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.270e-39
Identity = 82/152 (53.95%), Postives = 97/152 (63.82%), Query Frame = 2
Query:  242 GAPPTYFRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQXXXXXXXXXXXXXRGAPAPTVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFPPRI 697
            G  P Y R+SSFSRL PCLT+ WGDLPL+ +DSEDM+++  L+DAL VGW P    A   + +               APA  +   RG+HYRGVR+RPWGKFAAEIRDPAKNGARVWLGT+ET              MRGS+A LNFP RI
Sbjct:   16 GEFPVYRRNSSFSRLIPCLTETWGDLPLKVDDSEDMVIYTLLKDALNVGWSPFNFSAGEVKSEQREEEIVVSPAETTAAPAAEL--PRGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRI 165          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.804e-37
Identity = 83/156 (53.21%), Postives = 95/156 (60.90%), Query Frame = 2
Query:  248 PPTYFRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQXXXXXXXXXXXXXRGAP------APTVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFPPRI 697
            PPT     SFS L PCLTD WGDLPL+ +DSEDM+++  L DALT GW P    +   + +               AP      A  VVP +G+HYRGVRQRPWGKFAAEIRDPAKNGARVWLGT+ET              MRGS+ALLNFP RI
Sbjct:   10 PPT-----SFSSLMPCLTDTWGDLPLKVDDSEDMVIYGLLSDALTAGWTPFNLTSTEIKAEPREEIEPATIPVPSVAPPAETTTAQAVVP-KGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRI 159          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.579e-31
Identity = 82/188 (43.62%), Postives = 98/188 (52.13%), Query Frame = 2
Query:  146 SDYAVLDSVRQHLLGEXXXXXXXXXXXXXXXNGAPPTYFRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESD----RHQXXXXXXXXXXXXXRGAPAPTVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFPPRI 697
            SDYA+L+S+ +HLLG                 G      R +  S    C T++WG LPL+ENDSEDMLV+  L+DA        +     D    + +             +  P  T    + KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET              MRGSRALLNFP R+
Sbjct:    9 SDYALLESITRHLLG-----------------GGGENELRLNE-STPSSCFTESWGGLPLKENDSEDMLVYGLLKDAFHFDTSSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPV-TETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRV 177          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 69/144 (47.92%), Postives = 84/144 (58.33%), Query Frame = 2
Query:  257 YFRSSSFSRLYPCLTDNWGDLPLRENDSEDMLVFNFLRDALTVGWVPQEQLAESDRHQXXXXXXXXXXXXXRGAPAPTVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            YFR+ SFS +   L DNW DLPL  +DS+DM ++N LRDA++ GW P      S   +              G+ AP     +G  YRGVR+RPWGKFAAEIRDP KNGARVWLGT+ET              +RGS+A LNFP
Sbjct:   16 YFRNPSFSNVI--LNDNWSDLPLSVDDSQDMAIYNTLRDAVSSGWTPSVPPVTSPAEENKPPATKAS-----GSHAPR---QKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFP 149          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 57/130 (43.85%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  314 DLPLRENDSEDMLVFNFLRDA--LTVGWVPQEQLAESDRHQXXXXXXXXXXXXXRGAPAPTVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFPPRI 697
            DLPL ENDS++M+++  L +A  L + ++PQ       R+Q                P   +    GK YRGVR+RPWGK+AAEIRD A++GARVWLGTFET              MRG++ALLNFP  I
Sbjct:    8 DLPLNENDSQEMVLYEVLNEANALNIPYLPQ-------RNQLLPRNNILR-------PLQCI----GKKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEI 119          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 40/70 (57.14%), Postives = 45/70 (64.29%), Query Frame = 2
Query:  479 PAPTVVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            P P V     +HYRGVR RPWGKFAAEIRDP + G RVWLGTFET              +RGS+A+LNFP
Sbjct:  125 PVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFP 194          
BLAST of FC930329 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.688e-17
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  491 VVPSRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXXMRGSRALLNFP 688
            VVP+  KHYRGVRQRPWGKFAAEIRDP + G RVWLGTF+T              +RGS+A++NFP
Sbjct:  137 VVPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFP 202          
The following BLAST results are available for this feature:
BLAST of FC930329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
EF100_ARATH3.369e-4448.00Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF1_SOLLC5.035e-4052.94Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF2_NICSY3.263e-3954.19Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF1_TOBAC7.270e-3953.95Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF2_TOBAC6.804e-3753.21Ethylene-responsive transcription factor 2 OS=Nico... [more]
EF101_ARATH5.579e-3143.62Ethylene-responsive transcription factor 2 OS=Arab... [more]
ERF99_ARATH3.998e-2947.92Ethylene-responsive transcription factor 13 OS=Ara... [more]
PTI5_SOLLC1.289e-1943.85Pathogenesis-related genes transcriptional activat... [more]
EF103_ARATH2.058e-1757.14Ethylene-responsive transcription factor 6 OS=Arab... [more]
ERF5_TOBAC2.688e-1760.61Ethylene-responsive transcription factor 5 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionC34006C08EF PostHarvC1 Citrus clementina cDNA clone C34006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930329 ID=FC930329; Name=FC930329; organism=Citrus clementina; type=EST; length=697bp
GAGGTTGCAGTTGCACACTCACAATTCACAAAGAAAGTTAACGACAAGGA
ATAGGAAATATATACATAAACCAATTTCTGTTTTTAAATCCGGAAGCAAA
ATGCACGGACACAGTAGTAGTGGTGGTAGTATGAATATGATGCCGTCGGA
TTATGCTGTGCTGGATTCAGTTCGCCAGCACTTACTCGGCGAATCGGAGA
CTGGACTGAGCAGCGTGTCATCAGCGAGTTCCAAGTCCAACGGGGCTCCC
CCTACTTATTTCAGGAGCTCAAGCTTTAGCCGATTGTACCCATGTCTAAC
GGACAACTGGGGGGACCTCCCTTTGAGGGAGAACGACTCCGAGGACATGC
TTGTCTTTAATTTCTTGCGTGATGCCCTAACAGTTGGATGGGTTCCACAG
GAGCAGTTAGCCGAATCTGATCGCCATCAGGTGGCGGAAGTGGCGCCGGC
ACCGGCGTTACCGGAGGAGCGAGGTGCTCCGGCTCCTACAGTGGTGCCTT
CTAGGGGGAAGCATTACAGGGGGGTTAGGCAGAGACCTTGGGGGAAGTTT
GCGGCCGAAATACGTGACCCGGCTAAGAATGGGGCTCGGGTTTGGCTCGG
GACTTTCGAGACGGCTGAGGATGCGGCTCTGGCTTATGACCGAGCCGCTT
ACAGGATGAGGGGATCAAGGGCTCTTTTGAATTTTCCCCCTAGGATC
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