FC930331

Overview
NameFC930331
Unique NameFC930331
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig895 contig Ccv1_Contig895:282..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: JP650_ARATH (Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 2.461e-81
Identity = 145/224 (64.73%), Postives = 173/224 (77.23%), Query Frame = 2
Query:    2 NSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXXWVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYE 673
            N  S  F+GYG+ A+G K+ FK Y P+ +FKDYAK GV FA                     W+EPGKFFRES LK GTV+PMPDI+DKMP+RSFLPR+I++K PFS+S +  +K IFHA ENS+M  II DA++ECERPPS GETKRC+GSAEDMIDFATSVLG SV LRTT+NV GSK+ ++IG V GINGGK+T++VSCHQSL+PYLLYYCHSVPKVRVYE
Sbjct:  344 NPGSETFTGYGKGAEGSKLSFKTYTPNSTFKDYAKKGVAFAKYNVSTTTANTVGDGKTVNK-WIEPGKFFRESSLKEGTVIPMPDIKDKMPKRSFLPRSIITKLPFSTSKLGEIKRIFHAVENSTMGGIITDAVTECERPPSVGETKRCVGSAEDMIDFATSVLGRSVVLRTTENVAGSKEKVVIGKVNGINGGKLTKAVSCHQSLYPYLLYYCHSVPKVRVYE 566          
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: JP630_ARATH (Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.084e-80
Identity = 146/224 (65.18%), Postives = 172/224 (76.79%), Query Frame = 2
Query:    2 NSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXXWVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYE 673
            N  S  FSGYG+ A+G KI FK Y  + +FKDY KTGV FA                     WVEPGKFFRESMLK GT++ MPDI+DKMP+RSFLPR+IVSK PFS+S +  +K +FHA++NS+ME II DA+ ECERPP+  ETKRC+GSAEDMIDFATSVLG SV LRTT++V GSK+ +MIG V GINGG+VT+SVSCHQSL+PYLLYYCHSVPKVRVYE
Sbjct:  345 NPGSESFSGYGKGAEGNKIDFKTYTQNSTFKDYTKTGVEFAKYNRSSLGGGKTVNK------WVEPGKFFRESMLKEGTLIWMPDIKDKMPKRSFLPRSIVSKLPFSTSKIAEIKRVFHANDNSTMEGIITDAVRECERPPTVSETKRCVGSAEDMIDFATSVLGRSVVLRTTESVAGSKEKVMIGKVNGINGGRVTKSVSCHQSLYPYLLYYCHSVPKVRVYE 562          
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 2.636e-75
Identity = 139/228 (60.96%), Postives = 165/228 (72.37%), Query Frame = 2
Query:    2 NSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXX----WVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYE 673
            N  +  F+ YG+  +   I FK YG + +FKDY K   TF+                         WVEPGKFFRE MLK+GT+MPMPDI+DKMP+RSFLPR I SK PFS+S +  LK+IFHA + S +E +I DALSECER PS GETKRC+ SAEDMIDFATSVLG +V +RTT++ +GS  NIMIGSVKGINGGKVT+SVSCHQ+L+PYLLYYCHSVPKVRVYE
Sbjct:  343 NEGTDVFTTYGKGGNDPHINFKTYGVNNTFKDYVKDTATFSNYHNKTSQVLASLMEVNGGKKVNNRWVEPGKFFREKMLKSGTIMPMPDIKDKMPKRSFLPRVIASKLPFSTSKIAELKKIFHAGDESQVEKMIGDALSECERAPSAGETKRCVNSAEDMIDFATSVLGRNVVVRTTEDTKGSNGNIMIGSVKGINGGKVTKSVSCHQTLYPYLLYYCHSVPKVRVYE 570          
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.231e-74
Identity = 136/228 (59.65%), Postives = 166/228 (72.81%), Query Frame = 2
Query:    2 NSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXX----WVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYE 673
            N  +  F+ YG+  +   I FK YG + +FKDY K   TF+                         W+EPGKFFRE MLK+GT+MPMPDI+DKMP+RSFLPRAI +K PFS+S ++ LK+IFHA+ +S +  +I DALSECER PS GETK+C+ SAEDMIDFATSVLG +V +RTT+N  GSK NIMIGS+KGINGGKVT+SVSCHQ+L+P LLYYCHSVPKVRVYE
Sbjct:  345 NEGTDVFTTYGKGGNDPHINFKTYGVNNTFKDYVKDTATFSNYHNKTSQDLASLSEVNGGKKVNNRWIEPGKFFREKMLKSGTIMPMPDIKDKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYE 572          
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 4.971e-74
Identity = 136/228 (59.65%), Postives = 165/228 (72.37%), Query Frame = 2
Query:    2 NSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXX----WVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYE 673
            N  +  F  YG+  +   I FK YG + +FKDY K   TF+                         W+EPGKFFRE MLK+GT+MPMPDI+DKMP+RSFLPRAI +K PFS+S ++ LK+IFHA+ +S +  +I DALSECER PS GETK+C+ SAEDMIDFATSVLG +V +RTT+N  GSK NIMIGS+KGINGGKVT+SVSCHQ+L+P LLYYCHSVPKVRVYE
Sbjct:  342 NEGTDVFITYGKGGNDPHINFKTYGVNNTFKDYVKDTATFSNYHNKTSQDLASLSEVNGGKKVNNRWIEPGKFFREKMLKSGTIMPMPDIKDKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAKMIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRNVVVRTTENTNGSKGNIMIGSIKGINGGKVTKSVSCHQTLYPSLLYYCHSVPKVRVYE 569          
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 4.653e-72
Identity = 135/224 (60.27%), Postives = 159/224 (70.98%), Query Frame = 2
Query:    2 NSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXXWVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYE 673
            N  S  F+GYG++  G  + FK YG  +SFK Y K GV FA                     WVE GKFFRE+MLK GT+M MPDI+DKMP+R+FLPR IV   PFSSS +  +  +F A ENSSM  II  A+SECERP S GETKRC+GSAEDMIDFATSVLG  V +RTT+NV GSK+ ++IG V GINGG VT++VSCHQSL+PYLLYYCHSVP+VRVYE
Sbjct:  347 NLGSDNFTGYGQDNVGGNVSFKTYGQGQSFKVYTKDGVVFARYSNNVSSNGKTVNK------WVEEGKFFREAMLKEGTLMQMPDIKDKMPKRTFLPRNIVKNLPFSSSTIGEIWRVFGAGENSSMAGIISSAVSECERPASHGETKRCVGSAEDMIDFATSVLGRGVVVRTTENVVGSKKKVVIGKVNGINGGDVTRAVSCHQSLYPYLLYYCHSVPRVRVYE 564          
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.105e-56
Identity = 114/227 (50.22%), Postives = 145/227 (63.88%), Query Frame = 2
Query:   20 FSGYGENAD-GQKIGFKVY-GPDRSFKDYAKTGVTF------AXXXXXXXXXXXXXXXXXXXXXWV-EPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYE 673
            F GYGE ++    IGFK Y G + SFK YAK+GV F      +                     W  EPGKFFRE+ L +G  MPMPDI+DKMP R+FLPR I  K PF     N + E+F    +++M   +   ++ECER PS+GETKRC  SAED++DFA  +LGN + +R+T +  GS   I +G+V G++GGKVT+SVSCHQSLFPYL+YYCHSVPKVRVYE
Sbjct:  344 FKGYGEGSNPNHHIGFKEYAGSNNSFKGYAKSGVDFKEYHNTSSADAATTMSLEAVSSGHQHLKWSPEPGKFFRETELVSGNTMPMPDIKDKMPPRAFLPRDIAKKIPFKP---NAVSEVFGVPLDTAMGKAVTSTVAECERAPSRGETKRCATSAEDIVDFAVEMLGNDIVVRSTASTAGSGGQIRLGNVTGVDGGKVTRSVSCHQSLFPYLVYYCHSVPKVRVYE 567          
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: BURPE_ORYSJ (BURP domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=BURP14 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.103e-48
Identity = 106/230 (46.09%), Postives = 139/230 (60.43%), Query Frame = 2
Query:    2 NSVSHKFSGYGENAD-GQKIGFKVY-GPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXX--WV-EPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGI-NGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYE 673
            N  S  F GYG  ++   +IGF  Y G + +FK Y+  GV F                        W  EPGKFFRE  L  G  MPMPDI D+ P R+FLPR I +K PF ++ V+ L   F A+  ++M  ++   ++EC RPPS+GETKRC  SAED++DFA  +LG++V  R T++  G   ++ +G V G+  GG VT+SVSCHQSLFPYL+YYCHSVP VRVYE
Sbjct:  404 NPGSVTFKGYGLGSNPNHRIGFARYSGDNTTFKAYSNDGVEFKEYQNMSKMEVSKIEAAARRPPLRWSPEPGKFFRERDLVAGNRMPMPDIADRTPPRAFLPRDIAAKIPFDAAAVSAL---FGAAPGTAMRQVVSSTVAECARPPSRGETKRCATSAEDVVDFAVEMLGDNVVARATESTAGGGGDVRLGRVAGVPAGGNVTRSVSCHQSLFPYLVYYCHSVPTVRVYE 630          
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: BURPG_ORYSJ (BURP domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=BURP16 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.411e-44
Identity = 84/163 (51.53%), Postives = 118/163 (72.39%), Query Frame = 2
Query:  191 VEPGKFFRESMLKTGTVMPMPDIRDKMP--QRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGSKQNIMIGSVKGINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVYE 673
            ++PG FFRE  LK G V+ MPDI +++   + SFLPR+I  + PF +  V   K +F    N+++   + + +++C+  PSKGETKRC+ SAEDMIDFA ++LG+ + +R+T    G  ++IMIG VKGINGGK+T SVSCH+ LFPY++YYCHSVPK+RVYE
Sbjct:  123 IKPGIFFREQELKEGNVVRMPDIANELTTARSSFLPRSIADRIPFKAEAV---KSLFGLEPNTTLAKAVDETVAQCQSSPSKGETKRCVTSAEDMIDFAVAMLGDDIVVRSTVLPNGPGESIMIGKVKGINGGKITSSVSCHEYLFPYMVYYCHSVPKIRVYE 282          
BLAST of FC930331 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.918e-15
Identity = 54/160 (33.75%), Postives = 73/160 (45.62%), Query Frame = 2
Query:  206 FFRESMLKTGTVMPMPDIRDKMPQRSFLPRAIVSKFPFSSSNVNVLKEIFHASENSSMESIIKDALSECERPPSKGETKRCIGSAEDMIDFATSVLGNSVTLRTTQNVQGS----KQNIMIGSVK-GINGGKVTQSVSCHQSLFPYLLYYCHSVPKVRVY 670
            FF E  L  G  M +        ++ FLPR+     PFSS  V  +   F     S   + +   L +CE PP++GE K C  S E M+DFATS LG S  +R    V G     +Q   + +VK    GG   Q V+CH   + Y ++ CH     R Y
Sbjct:  213 FFLEKDLHPGKTMAVHFTATTAGEK-FLPRSEADAMPFSSEKVPEILSRFSVKPGSVEAAEMAQTLRDCEAPPAQGERKACATSLESMVDFATSSLGTS-HVRAASTVVGKEGSPEQEYTVTAVKRAAAGGDQDQLVACHAEPYAYAVFACHLTRATRAY 370          
The following BLAST results are available for this feature:
BLAST of FC930331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
JP650_ARATH2.461e-8164.73Probable polygalacturonase non-catalytic subunit J... [more]
JP630_ARATH2.084e-8065.18Probable polygalacturonase non-catalytic subunit J... [more]
GP1_SOLLC2.636e-7560.96Polygalacturonase-1 non-catalytic subunit beta OS=... [more]
GP3_SOLLC2.231e-7459.65Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
GP2_SOLLC4.971e-7459.65Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
Y639_ARATH4.653e-7260.27Probable polygalacturonase non-catalytic subunit A... [more]
BURPC_ORYSJ6.105e-5650.22BURP domain-containing protein 12 OS=Oryza sativa ... [more]
BURPE_ORYSJ2.103e-4846.09BURP domain-containing protein 14 OS=Oryza sativa ... [more]
BURPG_ORYSJ1.411e-4451.53BURP domain-containing protein 16 OS=Oryza sativa ... [more]
BURP3_ORYSJ8.918e-1533.75BURP domain-containing protein 3 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34006C11EF PostHarvC1 Citrus clementina cDNA clone C34006C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930331 ID=FC930331; Name=FC930331; organism=Citrus clementina; type=EST; length=674bp
CAACAGTGTCTCGCATAAATTCTCTGGATACGGGGAGAATGCGGACGGAC
AAAAGATCGGGTTCAAAGTTTATGGACCAGATCGCAGTTTTAAAGACTAT
GCCAAAACCGGTGTAACTTTTGCCAGCTACAGTAAAAGCGGCTCTGGCTC
AGCCAATGGCAGTTCGGTGAATAAAAATAATAATAAATGGGTGGAGCCGG
GCAAGTTCTTCCGCGAGTCTATGCTGAAGACGGGAACTGTGATGCCAATG
CCTGACATTCGAGATAAAATGCCTCAAAGGTCGTTTCTGCCCCGGGCCAT
CGTTTCCAAGTTCCCATTTTCGAGTTCCAATGTAAACGTACTCAAGGAAA
TATTCCATGCAAGTGAAAATTCTAGCATGGAGAGTATAATCAAGGATGCG
TTGAGCGAGTGTGAGCGGCCACCAAGCAAGGGCGAGACCAAACGGTGCAT
TGGCTCAGCCGAGGATATGATTGACTTCGCCACCTCAGTACTGGGAAACA
GCGTGACTCTTCGTACAACTCAGAACGTGCAAGGGTCAAAACAGAACATT
ATGATTGGTTCAGTGAAGGGAATCAACGGTGGCAAAGTCACCCAATCTGT
CTCTTGTCACCAAAGCTTGTTTCCATATTTGCTATACTACTGCCACTCGG
TTCCAAAAGTGAGGGTGTATGAAG
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