FC930332

Overview
NameFC930332
Unique NameFC930332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4207 contig Ccv1_Contig4207:39..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930332 vs. ExPASy Swiss-Prot
Match: PAP_CITUN (Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 1.061e-101
Identity = 194/215 (90.23%), Postives = 194/215 (90.23%), Query Frame = 1
Query:   67 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAADDDXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSSLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSP 711
            MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAADDD                    SPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFS LFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSP
Sbjct:    1 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAADDDEWGPEKEKEGGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSP 215          
BLAST of FC930332 vs. ExPASy Swiss-Prot
Match: LIPC_SOLDE (Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.431e-63
Identity = 131/218 (60.09%), Postives = 152/218 (69.72%), Query Frame = 1
Query:   67 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAD---DDXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSSLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSP 711
            MASIS  NQ PCKTL     +++ TSK S LP++S        +   +S++ FT  +P    +A +   +D                     PKE +EI+ LKK L DS YGT+RGL+A+SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL YTSFS LFPLLSRG LPL RVEEISQTIDSE+FTVQNS+ FAGPLATTSISTNAKFEVRSP
Sbjct:    1 MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFLSKTEQHRSISVKEFTNPKPKFTAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSP 218          
BLAST of FC930332 vs. ExPASy Swiss-Prot
Match: LIPC_SOLTU (Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.268e-62
Identity = 131/218 (60.09%), Postives = 151/218 (69.27%), Query Frame = 1
Query:   67 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAD---DDXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSSLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSP 711
            MASIS  NQ PCKTL     +++ TSK S LP++S            +S++ FT  +P    +A +   +D                     PKE +EI+ LKK L DS YGT+RGL+A+SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL YTSFS LFPLLSRG LPL RVEEISQTIDSE+FTVQNS+ FAGPLATTSISTNAKFEVRSP
Sbjct:    1 MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFPSKTELHRSISVKEFTNPKPKFTAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSP 218          
BLAST of FC930332 vs. ExPASy Swiss-Prot
Match: CHRC_CUCSA (Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.655e-62
Identity = 131/216 (60.65%), Postives = 155/216 (71.76%), Query Frame = 1
Query:   67 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSV-RISRSLAKKSFLSIQGFTRARPLVLTRAADDDXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSSLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSP 711
            MA +SQ NQ PCKTL+ NPP  Q TSKPS+ P+ S+   +R+ A KS +S++   + R ++      +D                     P E +EI  LKKALVDSFYGTDRGL  + +TRAEIVELITQLE+KNPTPAPTEALTLLN KWIL YT+F+ LFPLLSR  LPL +VEEISQTIDSEN TVQNS+QF+GPLATTSI+TNAKFEVRSP
Sbjct:    1 MAFVSQFNQLPCKTLALNPPQPQLTSKPSVFPIASIGATARAAAGKSLISVRPAFKVRAVLNDDEWGEDKDEKYGDDSSVAVAEKEEE-KPLEPSEIYKLKKALVDSFYGTDRGLRVSRDTRAEIVELITQLESKNPTPAPTEALTLLNGKWILAYTTFAGLFPLLSR-NLPLVKVEEISQTIDSENLTVQNSVQFSGPLATTSITTNAKFEVRSP 214          
BLAST of FC930332 vs. ExPASy Swiss-Prot
Match: PAP2_BRACM (Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.129e-53
Identity = 117/217 (53.92%), Postives = 148/217 (68.20%), Query Frame = 1
Query:   67 MASISQTNQFPCKTLSQNPPHNQFTSKP--SILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAADDDXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSSLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSP 711
            MA++   NQFPCKT  Q+  +++  SKP  S++P++++    S     F   +   R R +     A+D+                       E TE+  LK++LVDS YGTDRGL+A+SETRAEI +LITQLE+KNPTPAPT+AL LLN KWIL YTSF  LFPLLSRG +PL +V+EISQTIDS+NFTV+NS+ FAGPLATTSISTNAKFE+RSP
Sbjct:    1 MATVQFFNQFPCKTRVQSSANSKPLSKPPSSLVPMSALTRRPSFPPGEFAVSRSDFRVRVI----DAEDELDPETSEGGGSALLMAEEAIESVEETEV--LKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTDALFLLNGKWILAYTSFVGLFPLLSRGIVPLVKVDEISQTIDSDNFTVENSVLFAGPLATTSISTNAKFEIRSP 211          
BLAST of FC930332 vs. ExPASy Swiss-Prot
Match: PAP2_ARATH (Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.717e-51
Identity = 114/216 (52.78%), Postives = 145/216 (67.13%), Query Frame = 1
Query:   67 MASISQTNQFPCKTLSQNPPHNQFTSKPSIL-PLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAADDDXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSSLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSP 711
            MA++  + QF C+T     P+++  SKP  L P+ S+ I R +     +++      R +   RA D                        ++V E + LK++LVDS YGTDRGL+A+SETRAEI +LITQLE+KNPTPAPTEAL LLN KWIL YTSF +LFPLLSRG +PL +V+EISQTIDS+NFTVQNS++FAGPL T SISTNAKFE+RSP
Sbjct:    1 MATVQLSTQFSCQTRVSISPNSKSISKPPFLVPVTSI-IHRPMISTGGIAVS----PRRVFKVRATDTGEIGSALLAAEEAI---------EDVEETERLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTEALFLLNGKWILAYTSFVNLFPLLSRGIVPLIKVDEISQTIDSDNFTVQNSVRFAGPLGTNSISTNAKFEIRSP 202          
BLAST of FC930332 vs. ExPASy Swiss-Prot
Match: PAP1_ARATH (Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.522e-51
Identity = 113/219 (51.60%), Postives = 140/219 (63.93%), Query Frame = 1
Query:   67 MASISQTNQFPCKTLSQNPPHNQFTSK-PSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAADDDXXXXXXXXXXXXXXXXXXXXSPK---EVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSSLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSP 711
            MA++    QFPCKTL+ +  + +  SK P +LP+NS+     +         G +  RP    RA D D                    + K    V E + LK++L DS YGTDRGL+ +S+TRAEI ELITQLE+KNPTPAP EAL LLN KWIL YTSF  LFPLLSR   PL +V+EISQTIDS++FTVQNS++FAGP +TTS STNAKFE+RSP
Sbjct:    1 MATVPLFTQFPCKTLNPSSSNTKHQSKSPILLPINSINRRSEI---------GVSVHRPDFKIRATDIDDEWGQDGVERVFASSSTVSVADKAIESVEETERLKRSLADSLYGTDRGLSVSSDTRAEISELITQLESKNPTPAPNEALFLLNGKWILAYTSFVGLFPLLSRRIEPLVKVDEISQTIDSDSFTVQNSVRFAGPFSTTSFSTNAKFEIRSP 210          
BLAST of FC930332 vs. ExPASy Swiss-Prot
Match: PAP2_ORYSJ (Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.566e-47
Identity = 95/123 (77.24%), Postives = 108/123 (87.80%), Query Frame = 1
Query:  346 TEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSSLFPLLSRGTLP-LARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSP 711
            +E+  LK  L ++ YGT+RGL A+SETRAE+VELITQLEA+NPTPAPTEALTLLN KWIL YTSFS LFPLL  G+LP L +VEEISQTIDSENFTVQN I+F+GPLATTS+STNAKFEVRSP
Sbjct:   90 SEVAELKAKLKEALYGTERGLRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWILAYTSFSQLFPLLGSGSLPQLVKVEEISQTIDSENFTVQNCIKFSGPLATTSVSTNAKFEVRSP 212          
BLAST of FC930332 vs. ExPASy Swiss-Prot
Match: PAP1_BRACM (Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris GN=PAP1 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.837e-46
Identity = 107/211 (50.71%), Postives = 130/211 (61.61%), Query Frame = 1
Query:   88 NQFPCKTLSQNPPHNQFTSK-PSILPLNSVRISRSLAKKSFLSIQGFTRAR--PLVLTRAADDDXXXXXXXXXXXXXXXXXXXXSPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSSLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSP 711
            +QF CKT   +   + F SK P +LP+N +    ++ +  F            P    R  D D                    + +   E + LK+ L  S YGTDRGL+A+SETRAEI ELITQLE+KNP PAP EAL LLN KWILVYTSF  LFPLLSR   PL +V+EISQTIDS++FTV NS++FA PLATTS+STNAKFEVRSP
Sbjct:    9 SQFTCKTPITSSSTSSFQSKSPILLPINPINRRIAVHRHDFKVRASDVNDEWGPDSKGRGGDVDDEWGPEIGLNSSVAEKVAEEAIESAEETERLKRVLAGSLYGTDRGLSASSETRAEISELITQLESKNPNPAPNEALFLLNGKWILVYTSFVGLFPLLSRRISPLVKVDEISQTIDSDSFTVHNSVRFASPLATTSLSTNAKFEVRSP 219          
BLAST of FC930332 vs. ExPASy Swiss-Prot
Match: PG1_PEA (Plastoglobulin-1, chloroplastic OS=Pisum sativum GN=PG1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.860e-32
Identity = 65/120 (54.17%), Postives = 88/120 (73.33%), Query Frame = 1
Query:  352 IDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSSLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSP 711
            ++ LK++LVD+ YGT+ G  A SE RAE+ E + QLEA NPTPAP E   LLN  W+L+YT+ S L PLL+ G+LPL ++++ISQTID+++FTV NS   + P A+ S S +A FEVRSP
Sbjct:  132 LEGLKRSLVDTVYGTELGFRARSEVRAEVSEFVAQLEAANPTPAPVEEPDLLNGNWVLLYTASSELLPLLAAGSLPLLKLDKISQTIDTDSFTVVNSTTLSSPFASFSFSVSASFEVRSP 251          
The following BLAST results are available for this feature:
BLAST of FC930332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PAP_CITUN1.061e-10190.23Plastid-lipid-associated protein, chloroplastic OS... [more]
LIPC_SOLDE7.431e-6360.09Light-induced protein, chloroplastic OS=Solanum de... [more]
LIPC_SOLTU1.268e-6260.09Light-induced protein, chloroplastic OS=Solanum tu... [more]
CHRC_CUCSA1.655e-6260.65Chromoplast-specific carotenoid-associated protein... [more]
PAP2_BRACM3.129e-5353.92Plastid lipid-associated protein 2, chloroplastic ... [more]
PAP2_ARATH1.717e-5152.78Probable plastid-lipid-associated protein 2, chlor... [more]
PAP1_ARATH8.522e-5151.60Probable plastid-lipid-associated protein 1, chlor... [more]
PAP2_ORYSJ2.566e-4777.24Probable plastid-lipid-associated protein 2, chlor... [more]
PAP1_BRACM2.837e-4650.71Plastid lipid-associated protein 1, chloroplastic ... [more]
PG1_PEA8.860e-3254.17Plastoglobulin-1, chloroplastic OS=Pisum sativum G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34006D02EF PostHarvC1 Citrus clementina cDNA clone C34006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930332 ID=FC930332; Name=FC930332; organism=Citrus clementina; type=EST; length=713bp
GGAGATTTTCTAGTTCCTCTGCTGGCGAAAACTGTGTGTTGTAACTGTGT
GTTTTTGGAAAAGCTAATGGCTTCAATATCTCAAACCAACCAGTTCCCGT
GCAAGACTCTTTCACAAAACCCACCACACAATCAGTTCACCTCGAAGCCT
TCAATTCTTCCTTTGAACTCGGTTCGAATTTCACGGAGTCTCGCCAAGAA
ATCATTTCTTTCTATCCAAGGATTCACTCGGGCCAGGCCGCTGGTTCTAA
CTCGGGCTGCCGATGATGATGAGTGGGGCCCGGAGAAGGAGAAGGAGGGC
GGTGGCGCTCTGGCGGTGGCAGAGGAGGAGAGCCCAAAAGAAGTTACAGA
GATTGATAATTTGAAGAAAGCGCTTGTGGATTCGTTTTATGGGACCGATC
GTGGATTGAATGCCACAAGTGAGACGAGGGCTGAGATCGTTGAGCTTATT
ACGCAGCTTGAGGCTAAGAATCCAACCCCAGCTCCCACCGAGGCCTTAAC
TCTGCTAAATGCCAAATGGATTCTTGTGTACACATCTTTTTCAAGTTTGT
TTCCGTTGTTGTCAAGGGGAACATTGCCATTGGCGAGGGTGGAGGAGATA
TCTCAGACAATTGACTCAGAGAACTTCACGGTCCAGAACTCCATCCAGTT
TGCTGGGCCATTGGCTACAACTTCCATTAGTACCAATGCCAAGTTTGAAG
TGCGGAGCCCCAG
back to top