FC930333

Overview
NameFC930333
Unique NameFC930333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15455 contig Ccv1_Contig15455:366..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930333 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.142e-37
Identity = 87/135 (64.44%), Postives = 97/135 (71.85%), Query Frame = 2
Query:   20 NWEELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 424
            N +ELESLERQLDMSLKQIRSTRTQ MLD L +LQ KE  L+EAN+TLKQR             LMEG  +N LQ   +A+D GYG +  Q QGD FFH LECEPTLQIGYQ  DPI+V  AGPS+NNYM GWLP
Sbjct:  122 NSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQR-------------LMEGSTLN-LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ-NDPITVGGAGPSVNNYMAGWLP 241          
BLAST of FC930333 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.093e-36
Identity = 83/136 (61.03%), Postives = 94/136 (69.12%), Query Frame = 2
Query:   26 EELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGL-KPAQPQGDTFFHA--LECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 424
            ++LE+LERQLD SLKQIRSTRTQ+MLD L +LQ KE LL EAN+ L+QR              MEGYQ+N+LQLN SAED GYG        GD  F    +ECEPTLQIGY   DP SVVTAGPS+NNYM GWLP
Sbjct:  126 KDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQR--------------MEGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDPGSVVTAGPSMNNYMGGWLP 247          
BLAST of FC930333 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.637e-27
Identity = 73/136 (53.68%), Postives = 88/136 (64.71%), Query Frame = 2
Query:   26 EELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCG-YGLKPAQPQ--GDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 424
            +ELESLERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+             L+L +GYQ+  LQLNP+ E+   YG    Q Q     FF  LECEP LQIGYQ       + AGPS+NNYM GWLP
Sbjct:  126 KELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLR-------------LRLADGYQM-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ--DGMGAGPSVNNYMLGWLP 245          
BLAST of FC930333 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.303e-26
Identity = 71/135 (52.59%), Postives = 87/135 (64.44%), Query Frame = 2
Query:   26 EELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQL-NPS-AEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYM-QGWL 421
            +ELE LERQLD SL+QIRSTRTQ+MLD L +LQ +EQ+L EANKTLK+R               E  Q N  Q+ +PS     GYG +PAQ  G+ F+H LECEPTLQIGY     ++  TA  ++NNYM  GWL
Sbjct:  122 KELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRR-------------FEESSQANQQQVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQIGYHSDITMATATAS-TVNNYMPPGWL 242          
BLAST of FC930333 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.465e-26
Identity = 72/138 (52.17%), Postives = 88/138 (63.77%), Query Frame = 2
Query:   26 EELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAED--CGYGLKPAQPQGDT---FFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 424
            +ELE LERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+             L+L +GYQ+  LQLNP+ ED    YG    Q Q ++   FF  LECEP LQ+GYQ       + AGPS NNYM GWLP
Sbjct:  126 KELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLR-------------LRLADGYQM-PLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLECEPILQMGYQGQQDHG-MEAGPSENNYMLGWLP 248          
BLAST of FC930333 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 2
Query:   26 EELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLME-GYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 424
            +ELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++     H    G Q+ E G  +   +  P  +   +G       G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:  125 KELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHV--RGQQVWEQGCNLIGYERQPEVQQPLHG-------GNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of FC930333 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 2
Query:   26 EELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLME-GYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 424
            +ELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++     H    G Q+ E G  +   +  P  +   +G       G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:  125 KELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHV--RGQQVWEQGCNLIGYERQPEVQQPLHG-------GNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of FC930333 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.292e-17
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 2
Query:   20 NWEELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVN 235
            N +ELESLERQLDMSLKQIRSTRTQ MLD LT+ Q KE  L+EAN+TLKQR             LMEG Q+N
Sbjct:  122 NSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQR-------------LMEGSQLN 180          

HSP 2 Score: 29.261 bits (64), Expect = 1.292e-17
Identity = 15/31 (48.39%), Postives = 18/31 (58.06%), Query Frame = 3
Query:  255 VQKIVVMGLNQLNLRAIPSFTPWNVNPHCKL 347
            + K+  M   QL LRA+ SF  W VN  CKL
Sbjct:  186 MHKLWAMAGKQLKLRAMASFILWIVNLLCKL 216          
BLAST of FC930333 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.357e-17
Identity = 56/142 (39.44%), Postives = 80/142 (56.34%), Query Frame = 2
Query:   20 NWEELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR---TMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQP---ADPISVVTAGPSL--NNYMQGWL 421
            N +ELE LERQLD SLKQ+R  +TQYMLD L++LQ KE +L +AN+ L  +    + +RH    G     G++          ++  YG   A  QG   + +LEC+PTLQIGY     ++ ++V   G S   N Y+ GW+
Sbjct:  121 NSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRHHHIGG-----GWE------GGDQQNIAYGHPQAHSQG--LYQSLECDPTLQIGYSHPVCSEQMAVTVQGQSQQGNGYIPGWM 249          
BLAST of FC930333 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 2
Query:   20 NWEELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR---TMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQP---ADPISVVTAGPSL--NNYMQGWL 421
            N +ELE LERQLD SLKQ+RS +TQYMLD L++LQ+KEQ+L E N+ L  +    + +R     G    EG + N            Y    AQ QG   +  LEC PTLQ+GY     ++ I+  T   +   N Y+ GW+
Sbjct:  121 NSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRSHHMGGGGGWEGGEQNVT----------YAHHQAQSQG--LYQPLECNPTLQMGYDNPVCSEQITATTQAQAQQGNGYIPGWM 250          
The following BLAST results are available for this feature:
BLAST of FC930333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AGL9_PETHY2.142e-3764.44Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MTF1_PEA3.093e-3661.03MADS-box transcription factor 1 OS=Pisum sativum G... [more]
SEP3_ARATH7.637e-2753.68Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_ARADE1.303e-2652.59Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
AGL9_SINAL6.465e-2652.17Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
MADS7_ORYSJ2.909e-1842.65MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI2.909e-1842.65MADS-box transcription factor 7 OS=Oryza sativa su... [more]
AGL9_SOLLC1.292e-1763.89Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
SEP2_ARATH9.357e-1739.44Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
SEP1_ARATH4.644e-1640.14Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC34006D03EF PostHarvC1 Citrus clementina cDNA clone C34006D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930333 ID=FC930333; Name=FC930333; organism=Citrus clementina; type=EST; length=669bp
GAAGAAAGAAAGGAGAAGAAACTGGGAAGAGCTTGAGTCACTTGAAAGGC
AGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATG
CTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGC
AAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGATTTTG
CTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGAAT
CCCAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAGGG
CGATACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGGAT
ACCAGCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTCTGAAT
AATTACATGCAAGGATGGCTACCATGCTAAGAGAGCGGCGGGCATTACCA
GTCAATGTATTGCAGTTGATCCATAAGAATCAGCAACTTTGTATCCCTTT
GTAAGCAACCCTATTCAGTGACTAGGAACACGCAATCATAAGGTTTTATT
ATAATAACTCTACAGTGATCCTGCACTTTAGGGAAACTGATGACGATATA
TAGCTATGTTGTGTGTGAGTGTATTTTCAATCACCGCGCTTATCTTTATT
TAACAGGCCTTGTTTGAGA
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