FC930341

Overview
NameFC930341
Unique NameFC930341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig369 contig Ccv1_Contig369:1..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.312e-65
Identity = 126/149 (84.56%), Postives = 135/149 (90.60%), Query Frame = 2
Query:  191 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            M  K +KAEKKIAYDAKLC L+EEY QILV  +DNVGSNQL NIR+GL GDSVVLMGKNTMMKR++RMHAEKTGN A+LNLIPLL GNVGLIFTKGDLKEV +EVAKYKVGAPARVGLVAPIDVVVPPGNTGLD SQTSF QVL+IPTK
Sbjct:    1 MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 149          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 2.237e-65
Identity = 124/148 (83.78%), Postives = 136/148 (91.89%), Query Frame = 2
Query:  194 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QL NIR+GL GDSVVLMGKNTMMKR++R+H+E TGNTA LNL+PLL GNVGLIFTKGDLKEV +EVAKYKVGAPARVGLVAPIDVVV PGNTGLD SQTSF QVL+IPTK
Sbjct:    1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTK 148          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.984e-65
Identity = 124/149 (83.22%), Postives = 136/149 (91.28%), Query Frame = 2
Query:  191 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            M VKA+KAEKKI YD+KLCQLL EY+QILV AADNVGS QL NIR+GL GDSVVLMGKNTMMKR++R+HA+KTGN AFL+L+PLL GNVGLIFTKGDLKEV +EVAKYKVGAPARVGLVAPIDVVV PGNTGLD SQTSF QVL+IPTK
Sbjct:    1 MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTK 149          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 6.509e-65
Identity = 123/148 (83.11%), Postives = 136/148 (91.89%), Query Frame = 2
Query:  194 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QL NIR+GL GDSVVLMGKNTMMKR++R+H+E +GNTA LNL+PLL GNVGLIFTKGDLKEV +EVAKYKVGAPARVGLVAPIDVVV PGNTGLD SQTSF QVL+IPTK
Sbjct:    1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTK 148          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 7.197e-64
Identity = 125/149 (83.89%), Postives = 133/149 (89.26%), Query Frame = 2
Query:  191 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            M  KA+KAEKKI YD KLCQLL+EYTQILV  ADNVGS QL NIR+GL GDSVVLMGKNTMMKR++R+HAEKTGN AFLNLIPLL GNVGLIFTKG LKEV +EVAKYKVGAPA VGLVAPIDVVVPPGNTGLD SQTSF QVL+IPTK
Sbjct:    1 MAPKATKAEKKIVYDGKLCQLLDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNTMMKRSVRIHAEKTGNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGAPACVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 149          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 237.269 bits (604), Expect = 5.157e-62
Identity = 114/149 (76.51%), Postives = 134/149 (89.93%), Query Frame = 2
Query:  191 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            M +K +KAEKK+AYD KLCQLL+EYT++L+A ADNVGSNQL  IR+GL GDS+VLMGKNT+++R I++HA+ TGN  FL L+PLL GNVGLIFTKGDLKEV++EVAKYKVGAPARVGLVAP+DVVVPPGNTGLD SQTSF QVL+IPTK
Sbjct:    1 MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTK 149          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 1.834e-59
Identity = 114/149 (76.51%), Postives = 132/149 (88.59%), Query Frame = 2
Query:  191 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            M +K +KAEKKIAYD KLC LL+EYT++L+A ADNVGS QL +IRRGL GDSVVLMGKNT+++R I+++AEKTGN  F  L+ LL GNVGLIFTKGDLKEV++EVAKYKVGAPARVGLVAP+DVVVPPGNTGLD SQTSF QVL+IPTK
Sbjct:    1 MAIKRTKAEKKIAYDKKLCSLLDEYTKVLIALADNVGSKQLQDIRRGLRGDSVVLMGKNTLIRRCIKVYAEKTGNHTFDPLMDLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTK 149          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.901e-58
Identity = 112/149 (75.17%), Postives = 128/149 (85.91%), Query Frame = 2
Query:  191 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            M VK +KAEKKIAYD KLCQLL+EY+Q+L+A+ADNVGSNQL  IR GL GDS+VLMGKNTMMKR+IR+HAE TGN    N+  L   NVGLIFTKGDL +V++E++KYKVGAPAR GLVAPIDVVVPPGNTGLD SQTSF QVL+IPTK
Sbjct:    1 MAVKPTKAEKKIAYDQKLCQLLDEYSQVLIASADNVGSNQLQAIRIGLRGDSIVLMGKNTMMKRSIRLHAENTGNENLRNVEQLFLPNVGLIFTKGDLNQVREEISKYKVGAPARFGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 149          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_CERCA (60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.761e-34
Identity = 74/148 (50.00%), Postives = 97/148 (65.54%), Query Frame = 2
Query:  194 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            +V+ +KA  K  Y  K+ +L +EY +  +  ADNVGS Q+ NIR  L G  VVLMGKNTMM++ IR H E   N     L+P + GNVG +FTKGDL EV+ ++ + KV APAR G +AP+ V++P  NTGL   +TSF Q L IPTK
Sbjct:    1 MVRENKAAWKAQYFLKVVELFDEYPKCFIVGADNVGSKQMQNIRTSLRGLGVVLMGKNTMMRKAIRGHLEN--NAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAPLPVIIPAQNTGLGPEKTSFFQALSIPTK 146          
BLAST of FC930341 vs. ExPASy Swiss-Prot
Match: RLA0_DROME (60S acidic ribosomal protein P0 OS=Drosophila melanogaster GN=RpLP0 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.852e-33
Identity = 73/148 (49.32%), Postives = 98/148 (66.22%), Query Frame = 2
Query:  194 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLHNIRRGLPGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLHGNVGLIFTKGDLKEVKQEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDSSQTSFCQVLHIPTK 637
            +V+ +KA  K  Y  K+ +L +E+ +  +  ADNVGS Q+ NIR  L G +VVLMGKNTMM++ IR H E   N     L+P + GNVG +FTKGDL EV+ ++ + KV APAR G +AP+ V++P  NTGL   +TSF Q L IPTK
Sbjct:    1 MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAIRGHLEN--NPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTK 146          
The following BLAST results are available for this feature:
BLAST of FC930341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RLA0_SOYBN1.312e-6584.5660S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA02_ARATH2.237e-6583.7860S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA01_ARATH4.984e-6583.2260S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA03_ARATH6.509e-6583.1160S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA0_LUPLU7.197e-6483.8960S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_ORYSJ5.157e-6276.5160S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA0_MAIZE1.834e-5976.5160S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_CHERU5.901e-5875.1760S acidic ribosomal protein P0 OS=Chenopodium rub... [more]
RLA0_CERCA7.761e-3450.0060S acidic ribosomal protein P0 OS=Ceratitis capit... [more]
RLA0_DROME3.852e-3349.3260S acidic ribosomal protein P0 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionC34006E02EF PostHarvC1 Citrus clementina cDNA clone C34006E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930341 ID=FC930341; Name=FC930341; organism=Citrus clementina; type=EST; length=639bp
GAAAGCCTCACAGATAATTCTCGGGTTTTCTCTTGTACACTTCTTTCACT
CTCTTTGTATCTCGTTGAGGTTAAAGAGACCGCAATTCCGCTGCTGTCCG
CCTTGGCAAGCCGCTGCTTCGTCTTGGCCCTCGATTTTGTATAAATTTAC
AACTTTTTACCACCAACAAAAGTAGAACCAAATCCACCAAATGGTAGTGA
AAGCATCGAAGGCCGAGAAGAAGATCGCGTACGACGCGAAGCTATGCCAG
TTGCTGGAAGAGTACACCCAAATATTGGTGGCGGCCGCCGACAACGTGGG
GTCCAATCAACTCCACAACATTCGTAGGGGTCTGCCTGGAGACTCCGTTG
TGCTCATGGGAAAGAACACTATGATGAAGAGGACTATCAGAATGCACGCT
GAGAAGACCGGCAACACTGCCTTTCTCAATCTCATCCCCCTCCTTCACGG
CAATGTTGGGTTGATTTTCACAAAAGGAGATTTGAAGGAAGTGAAACAGG
AGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCT
CCAATAGATGTGGTTGTTCCTCCCGGCAACACAGGTCTCGACTCCTCCCA
GACCTCCTTCTGCCAGGTGCTTCACATTCCCACCAAGAT
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