FC930342

Overview
NameFC930342
Unique NameFC930342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15143 contig Ccv1_Contig15143:1..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930342 vs. ExPASy Swiss-Prot
Match: UMP1_ARATH (Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.169e-64
Identity = 128/210 (60.95%), Postives = 152/210 (72.38%), Query Frame = 2
Query:   56 MATQIFSRMFLSNPTATKALASLLSRSFSTTATTIKXXXXXXXXXXXXXXXXXXTAVRFGSGGIVTGPSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGRGPFINGQAVPYDPKYH 685
            MAT   SR  L  P   K+L+ L +RSF+++A   K                  +  R   GG+V   S +G+ST+  ++SLND +PNWSNRPPKETILLDGCDFEHWLVV+E P+G+PTRDEIID YIKTLA +  G EDEARMKIYSVST+ YYAFGALV E+ S+KLKEL  VRWVLPDSYLDV+NKDYG  PFI+G+AVPYDPKYH
Sbjct:    1 MATHTISRSILCRPA--KSLSFLFTRSFASSAPLAKSPASSLLSRSRPLVAAFSSVFR---GGLV---SVKGLSTQATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQGEPTRDEIIDSYIKTLAQIV-GSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYDPKYH 201          
BLAST of FC930342 vs. ExPASy Swiss-Prot
Match: DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.201e-30
Identity = 69/147 (46.94%), Postives = 95/147 (64.63%), Query Frame = 2
Query:  257 PSARGMSTRPATASLNDSSPNWSNRPPKETILLDGCDFEHWLVVMEKPEGD-PTRDEIIDRYIKTLATVFDGREDEARMKIYSVSTKHYYAFGALVDEETSYKLKELPGVRWVLPDSYLDVKNKDYGRGPFINGQAVP-----YDPK 679
            P+ R ++    ++  N+++ N      +ETI+L GCD+ HWL+VME P+   PTR+++ID Y+ TLATV  G  +EA+  +Y+ ST  Y  F   V EETS K K LPGV WVLPDSY+DVKNKDYG   ++NG+ +P     Y PK
Sbjct:   51 PTVRALTDGEYSSRRNNNNNNSGEE--RETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVL-GSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPK 194          
The following BLAST results are available for this feature:
BLAST of FC930342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UMP1_ARATH2.169e-6460.95Uncharacterized protein At3g15000, mitochondrial O... [more]
DAG_ANTMA1.201e-3046.94DAG protein, chloroplastic OS=Antirrhinum majus GN... [more]
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Properties
Property NameValue
Genbank descriptionC34006E03EF PostHarvC1 Citrus clementina cDNA clone C34006E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930342 ID=FC930342; Name=FC930342; organism=Citrus clementina; type=EST; length=686bp
GATCGTCTAATTTCCTTTTCATTTATCTCCCTCTGTCTCTTAGGGTTTAG
CAGAAATGGCGACCCAGATATTCTCTCGTATGTTTCTCTCAAATCCCACC
GCCACCAAAGCGCTAGCGTCTCTCTTGTCTCGCTCGTTCTCCACCACCGC
CACCACCATCAAGCCCTCTTCCCGTTCTCTACCCCTCCTCTTCCTCAACC
GCTTCCGCCCTTTGTCCACCGCGGTTCGTTTTGGCTCTGGCGGAATCGTC
ACCGGGCCCTCCGCTCGCGGGATGTCGACACGTCCCGCCACCGCTTCGCT
CAACGACAGCAGCCCCAATTGGTCGAACCGGCCGCCTAAAGAAACGATTT
TGCTTGATGGGTGTGATTTTGAGCACTGGCTCGTTGTGATGGAAAAGCCT
GAAGGGGACCCCACTAGGGACGAGATTATTGATCGTTATATCAAAACCCT
TGCCACGGTTTTTGACGGCCGTGAGGATGAAGCAAGGATGAAGATCTACT
CAGTTTCAACTAAGCACTACTACGCATTTGGAGCTCTTGTGGATGAAGAA
ACTTCATACAAGCTCAAAGAGTTGCCTGGAGTGCGCTGGGTTCTTCCTGA
TTCATATTTGGATGTTAAAAACAAAGATTATGGNAGGGGACCTTTCATTA
ATGGGCAGGCTGTTCCTTATGACCCAAAGTATCATG
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