FC930344

Overview
NameFC930344
Unique NameFC930344
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930344_ssr22 microsatellite FC930344_ssr22:22..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8568 contig Ccv1_Contig8568:175..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930344 vs. ExPASy Swiss-Prot
Match: DOPP1_MOUSE (Dolichyldiphosphatase 1 OS=Mus musculus GN=Dolpp1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.086e-30
Identity = 82/212 (38.68%), Postives = 113/212 (53.30%), Query Frame = 2
Query:   89 KAVTLTHVRYRKGDQLGHFLAWVSLVPVFISLGGFVSHFIFRREIQGMFFALGLLVSQFINEFIKTTVQQARPEMCVLLETCDSHGWPSSHSQYMFFFAVYFTLLTCKGIGLWGIKNRWFSNVLHW---------TLAVLTMYSRVYLGYHTVAQVFSXXXXXXXXXXXWFWFVNSVLFPYFPAIEESAFGRYFYVKDTSHIPNPLKVDYTM 697
            + VTLTHV Y  GD  GH LA++SL P+F+ +G F++  IF+RE+  + F  GL ++Q +N  IK  +Q+ RP           +G PSSHSQ+M+FF+VY  L     + +    N  F ++L W         T A L  YSRVYL YHT +QVF            WF     +L P FP I       +F ++DTS IPN L  +YT+
Sbjct:   14 RPVTLTHVEYPAGDLSGHLLAYLSLSPIFVVVG-FLTLIIFKRELHTISFLGGLALNQGVNWLIKHVIQEPRPCGGPHTAVGTKYGMPSSHSQFMWFFSVYSFLFLY--LRMHQTNNARFLDLL-WRHVLSLGLLTAAFLVSYSRVYLLYHTWSQVFYGGVAGSLMAVAWFIITQEILTPLFPRIAAWPISEFFLIRDTSLIPNVLWFEYTV 221          
BLAST of FC930344 vs. ExPASy Swiss-Prot
Match: DOPP1_HUMAN (Dolichyldiphosphatase 1 OS=Homo sapiens GN=DOLPP1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.086e-30
Identity = 83/212 (39.15%), Postives = 113/212 (53.30%), Query Frame = 2
Query:   89 KAVTLTHVRYRKGDQLGHFLAWVSLVPVFISLGGFVSHFIFRREIQGMFFALGLLVSQFINEFIKTTVQQARPEMCVLLETCDSHGWPSSHSQYMFFFAVYFTLLTCKGIGLWGIKNRWFSNVLHW---------TLAVLTMYSRVYLGYHTVAQVFSXXXXXXXXXXXWFWFVNSVLFPYFPAIEESAFGRYFYVKDTSHIPNPLKVDYTM 697
            + VTLTHV Y  GD  GH LA++SL PVF+ +G FV+  IF+RE+  + F  GL +++ +N  IK  +Q+ RP           +G PSSHSQ+M+FF+VY  L     + +    N  F ++L W          +A L  YSRVYL YHT +QV             WF F   VL P FP I       +F ++DTS IPN L  +YT+
Sbjct:   14 RPVTLTHVEYPAGDLSGHLLAYLSLSPVFVIVG-FVTLIIFKRELHTISFLGGLALNEGVNWLIKNVIQEPRPCGGPHTAVGTKYGMPSSHSQFMWFFSVYSFLFLY--LRMHQTNNARFLDLL-WRHVLSLGLLAVAFLVSYSRVYLLYHTWSQVLYGGIAGGLMAIAWFIFTQEVLTPLFPRIAAWPVSEFFLIRDTSLIPNVLWFEYTV 221          
BLAST of FC930344 vs. ExPASy Swiss-Prot
Match: DOPP1_CALJA (Dolichyldiphosphatase 1 OS=Callithrix jacchus GN=DOLPP1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.336e-30
Identity = 83/212 (39.15%), Postives = 112/212 (52.83%), Query Frame = 2
Query:   89 KAVTLTHVRYRKGDQLGHFLAWVSLVPVFISLGGFVSHFIFRREIQGMFFALGLLVSQFINEFIKTTVQQARPEMCVLLETCDSHGWPSSHSQYMFFFAVYFTLLTCKGIGLWGIKNRWFSNVLHW---------TLAVLTMYSRVYLGYHTVAQVFSXXXXXXXXXXXWFWFVNSVLFPYFPAIEESAFGRYFYVKDTSHIPNPLKVDYTM 697
            + VTLTHV Y  GD  GH LA++SL PVF+ +G FV+  IF+RE+  + F  GL +++ +N  IK  +Q+ RP           +G PSSHSQ+M+FF+VY  L     + +    N  F ++L W           A L  YSRVYL YHT +QV             WF F   VL P FP I       +F ++DTS IPN L  +YT+
Sbjct:   14 RPVTLTHVEYPAGDLSGHLLAYLSLSPVFVIVG-FVTLIIFKRELHTISFLGGLALNEGVNWLIKNVIQEPRPCGGPHTAVGTKYGMPSSHSQFMWFFSVYSFLFLY--LRMHQTNNARFLDLL-WRHVLSLGLLAAAFLVSYSRVYLLYHTWSQVLYGGIAGGLMAVAWFIFTQEVLTPLFPRIAAWPISEFFLIRDTSLIPNVLWFEYTV 221          
BLAST of FC930344 vs. ExPASy Swiss-Prot
Match: DOPP1_CALMO (Dolichyldiphosphatase 1 OS=Callicebus moloch GN=DOLPP1 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.969e-30
Identity = 83/212 (39.15%), Postives = 112/212 (52.83%), Query Frame = 2
Query:   89 KAVTLTHVRYRKGDQLGHFLAWVSLVPVFISLGGFVSHFIFRREIQGMFFALGLLVSQFINEFIKTTVQQARPEMCVLLETCDSHGWPSSHSQYMFFFAVYFTLLTCKGIGLWGIKNRWFSNVLHW---------TLAVLTMYSRVYLGYHTVAQVFSXXXXXXXXXXXWFWFVNSVLFPYFPAIEESAFGRYFYVKDTSHIPNPLKVDYTM 697
            + VTLTHV Y  GD  GH LA++SL PVF+ +G FV+  IF+RE+  + F  GL +++ +N  IK  +Q+ RP           +G PSSHSQ+M+FF+VY  L     + +    N  F ++L W           A L  YSRVYL YHT +QV             WF F   VL P FP I       +F ++DTS IPN L  +YT+
Sbjct:   14 RPVTLTHVEYPAGDLSGHLLAYLSLGPVFVIVG-FVTLIIFKRELHTISFLGGLALNEGVNWLIKNVIQEPRPCGGPHTAVGTKYGMPSSHSQFMWFFSVYSFLFLY--LRMHQTNNARFLDLL-WRHVLSLGLLAAAFLVSYSRVYLLYHTWSQVLYGGIAGGLMAVAWFIFTQEVLTPLFPRIAAWPISEFFLIRDTSLIPNVLWFEYTV 221          
BLAST of FC930344 vs. ExPASy Swiss-Prot
Match: DOPP1_PAPAN (Dolichyldiphosphatase 1 OS=Papio anubis GN=DOLPP1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.102e-30
Identity = 82/212 (38.68%), Postives = 112/212 (52.83%), Query Frame = 2
Query:   89 KAVTLTHVRYRKGDQLGHFLAWVSLVPVFISLGGFVSHFIFRREIQGMFFALGLLVSQFINEFIKTTVQQARPEMCVLLETCDSHGWPSSHSQYMFFFAVYFTLLTCKGIGLWGIKNRWFSNVLHW---------TLAVLTMYSRVYLGYHTVAQVFSXXXXXXXXXXXWFWFVNSVLFPYFPAIEESAFGRYFYVKDTSHIPNPLKVDYTM 697
            + VTLTHV Y  GD  GH LA++SL PVF+ +G FV+  IF+RE+  + F  GL +++ +N  IK  +Q+ RP           +G PSSHSQ+M+FF++Y  L     + +    N  F ++L W           A L  YSRVYL YHT +QV             WF F   VL P FP I       +F ++DTS IPN L  +YT+
Sbjct:   14 RPVTLTHVEYPAGDLSGHLLAYLSLSPVFVIVG-FVTLIIFKRELHTISFLGGLALNEGVNWLIKNVIQEPRPCGGPHTAVGTKYGMPSSHSQFMWFFSIYSFLFLY--LRMHQTNNARFLDLL-WRHVLSLGLLAAAFLVSYSRVYLLYHTWSQVLYGGIAGGLMAIAWFIFTQEVLTPLFPRIAAWPVSEFFLIRDTSLIPNVLWFEYTV 221          
BLAST of FC930344 vs. ExPASy Swiss-Prot
Match: DOPP1_RHIFE (Dolichyldiphosphatase 1 OS=Rhinolophus ferrumequinum GN=DOLPP1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.189e-29
Identity = 84/212 (39.62%), Postives = 113/212 (53.30%), Query Frame = 2
Query:   89 KAVTLTHVRYRKGDQLGHFLAWVSLVPVFISLGGFVSHFIFRREIQGMFFALGLLVSQFINEFIKTTVQQARPEMCVLLETCDSHGWPSSHSQYMFFFAVYFTLLTCKGIGLWGIKNRWFSNVLHW---------TLAVLTMYSRVYLGYHTVAQVFSXXXXXXXXXXXWFWFVNSVLFPYFPAIEESAFGRYFYVKDTSHIPNPLKVDYTM 697
            + VTLTHV Y  GD  GH LA++SL PV I +G FV+  IF+RE+  + F  GL++++ +N  IK  +Q+ RP           +G PSSHSQ+M+FF+VY  L     + +    N  F ++L W         T A L  YSRVYL YHT +QV             WF F   VL P FP I       +F ++DTS IPN L  +YT+
Sbjct:   14 RPVTLTHVEYPAGDLSGHLLAYLSLSPVVIIVG-FVTLIIFKRELHTISFLGGLVLNEGVNWLIKHVIQEPRPCGGPHPTVGTKYGMPSSHSQFMWFFSVYSFLFLY--LRMHQTNNARFLDLL-WRHVLSLGLLTAAFLVSYSRVYLLYHTWSQVLYGGVAGSLMAIAWFAFTQEVLTPLFPRIAAWPISEFFLIRDTSLIPNVLWFEYTV 221          
BLAST of FC930344 vs. ExPASy Swiss-Prot
Match: DOPP1_DICDI (Dolichyldiphosphatase 1 OS=Dictyostelium discoideum GN=dolpp1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.519e-28
Identity = 78/205 (38.05%), Postives = 113/205 (55.12%), Query Frame = 2
Query:   86 LKAVTLTHVRYRKGDQLGHFLAWVSLVPVFISLGGFVSHFIFRREIQGMFFALGLLVSQFINEFIKTTVQQARPEMCVLLETCDSHGWPSSHSQYMFFFAVYFTLLTCKGIGLWGIKNRWFSNVLH-WTLAVLTMYSRVYLGYHTVAQVFSXXXXXXXXXXXWFWFVNSVLFPY-FPAIEESAFGRYFYVKDTSHIPNPLKVDYT 694
            L  V LT V Y+  D  G F A+V+L+P+ I++G  ++  +FRR+++ +   LGLL S+  N  +K ++++ RP M   L    S+G PSSHSQ+MFFFAV  TL   K    +G K     +V   + LA    YSRV+L YHT  QVF            W+  +  +  PY FP I     G+YFY++D+S I + L  +YT
Sbjct:    9 LTFVELTTVHYQHDDPFGLFNAYVTLIPIAIAIG-VITLILFRRDVRTISIFLGLLFSECTNYVLKKSIKEHRPTMWKELRK-QSYGMPSSHSQFMFFFAVLMTLFYLKKRIRFGSKILPIISVTFLFFLAAGVAYSRVHLYYHTAKQVFCGSFIGICLGFIWYGVIEYIFRPYLFPIIINHPIGKYFYLRDSSEIEDLLNFEYT 211          
BLAST of FC930344 vs. ExPASy Swiss-Prot
Match: CAX4_YEAST (Dolichyldiphosphatase OS=Saccharomyces cerevisiae GN=CAX4 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.460e-11
Identity = 61/208 (29.33%), Postives = 96/208 (46.15%), Query Frame = 2
Query:  104 THVRYRKGDQLGHFLAWVSLVPVFISLGGFVSHFIFRREIQGMFFALGLLVSQFINEFIKTTVQQARPEMCVLLETCDS----HGWPSSHSQYMFFFAVYFTLLTCKGIGLWGIKNRWFSNVLHWTLAVLTM---YSRVYLGYHTVAQVFSXXXXXXXXXXXWFWFVNSV----LFPYFPAIEESAFGRYFYVKDTSHI-PNPLKVDY 691
            T++ Y   D L    A+ SL+P+ + L  ++S FI  RE++    A G L+++  N  IK  ++Q RP         D+    +G PS+HSQ+M F    FT  + K    W   N     +    LA+L+    +SRVYL YH + QV             +F+ V  +    L  +F  +      R FY+ D+ ++ P  LK +Y
Sbjct:   20 TYILYDSHDFLSFLSAYFSLMPILV-LAFYLSWFIITRELEACIVAFGQLMNEIFNNVIKNIIKQPRPVSFGASFQNDTIRSGYGMPSAHSQFMGF---CFTYNSLKIYTSWKNLNFLEKCIFSGALALLSFCVCFSRVYLHYHNLDQVIVGFSVGALTGSLYFFIVGIIRELGLINWFLKLR---IVRLFYMTDSYNLAPLTLKENY 220          
The following BLAST results are available for this feature:
BLAST of FC930344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
DOPP1_MOUSE4.086e-3038.68Dolichyldiphosphatase 1 OS=Mus musculus GN=Dolpp1 ... [more]
DOPP1_HUMAN4.086e-3039.15Dolichyldiphosphatase 1 OS=Homo sapiens GN=DOLPP1 ... [more]
DOPP1_CALJA5.336e-3039.15Dolichyldiphosphatase 1 OS=Callithrix jacchus GN=D... [more]
DOPP1_CALMO6.969e-3039.15Dolichyldiphosphatase 1 OS=Callicebus moloch GN=DO... [more]
DOPP1_PAPAN9.102e-3038.68Dolichyldiphosphatase 1 OS=Papio anubis GN=DOLPP1 ... [more]
DOPP1_RHIFE1.189e-2939.62Dolichyldiphosphatase 1 OS=Rhinolophus ferrumequin... [more]
DOPP1_DICDI8.519e-2838.05Dolichyldiphosphatase 1 OS=Dictyostelium discoideu... [more]
CAX4_YEAST1.460e-1129.33Dolichyldiphosphatase OS=Saccharomyces cerevisiae ... [more]
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Properties
Property NameValue
Genbank descriptionC34006E05EF PostHarvC1 Citrus clementina cDNA clone C34006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930344 ID=FC930344; Name=FC930344; organism=Citrus clementina; type=EST; length=750bp
GAATTTCCTTACTACCAAACTATTCATTCATTCGTTCACGTTTACTCAGA
TCTTTCCATCCCACTCCGCCATGGCCACGCCGCCGCTGAAGGCCGTGACA
CTGACCCACGTGCGGTACCGAAAGGGCGATCAGCTGGGCCACTTCTTAGC
GTGGGTCTCGCTCGTCCCCGTCTTCATAAGCCTCGGCGGGTTCGTTTCCC
ATTTCATCTTTCGCCGCGAGATTCAAGGCATGTTCTTCGCTCTCGGCCTC
TTAGTCTCCCAATTCATCAACGAGTTCATCAAAACGACGGTCCAGCAGGC
CCGCCCCGAGATGTGCGTGCTCTTGGAAACGTGCGATTCCCACGGCTGGC
CCTCCAGTCACTCCCAGTACATGTTCTTTTTCGCCGTTTACTTTACGCTC
TTGACTTGCAAAGGGATCGGGCTTTGGGGGATTAAAAACAGGTGGTTCTC
AAACGTTCTGCATTGGACTTTGGCTGTGTTGACTATGTACTCGAGGGTTT
ATTTGGGTTACCATACAGTCGCTCAGGTCTTTTCCGGGGCTATTTTGGGG
ATTTTGATCGGAGCTGGGTGGTTTTGGTTTGTCAATTCGGTGTTGTTTCC
GTATTTTCCGGCTATCGAGGAGAGTGCTTTTGGGAGATATTTTTATGTCA
AGGATACTTCTCATATTCCTAATCCGTTGAAAGTCGATTACACAATGCCA
GGGCTGCTAGAAGTAGTGCTAACAAGGTTTCTAAAAGCATTGACTGATGA
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