FC930347

Overview
NameFC930347
Unique NameFC930347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length645
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930347_ssr20 microsatellite FC930347_ssr20:20..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15144 contig Ccv1_Contig15144:1..645. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930347 vs. ExPASy Swiss-Prot
Match: SFRS7_MOUSE (Splicing factor, arginine/serine-rich 7 OS=Mus musculus GN=Sfrs7 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.949e-20
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 1
Query:   85 DKMSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK----NGWRVELSHNXXXXXXXXXXXXXXXXXXDLKCYECGEPGHFAREC 408
            D  ++VYVGNL +   + +LE  F  +G +R+VW+AR PPG+AF++F+D RDA+DA+R LDGK    +  RVELS                    + +CYECGE GH+A +C
Sbjct:   37 DSETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 148          
BLAST of FC930347 vs. ExPASy Swiss-Prot
Match: SFRS7_HUMAN (Splicing factor, arginine/serine-rich 7 OS=Homo sapiens GN=SFRS7 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.580e-20
Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   94 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK----NGWRVELSHNXXXXXXXXXXXXXXXXXXDLKCYECGEPGHFAREC 408
            ++VYVGNL +   + +LE  F  +G +R+VW+AR PPG+AF++F+D RDA+DA+R LDGK    +  RVELS                    + +CYECGE GH+A +C
Sbjct:   11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119          
BLAST of FC930347 vs. ExPASy Swiss-Prot
Match: SFRS7_BOVIN (Splicing factor, arginine/serine-rich 7 OS=Bos taurus GN=SFRS7 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.580e-20
Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   94 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGK----NGWRVELSHNXXXXXXXXXXXXXXXXXXDLKCYECGEPGHFAREC 408
            ++VYVGNL +   + +LE  F  +G +R+VW+AR PPG+AF++F+D RDA+DA+R LDGK    +  RVELS                    + +CYECGE GH+A +C
Sbjct:   11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119          
BLAST of FC930347 vs. ExPASy Swiss-Prot
Match: RSP6_CAEEL (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans GN=rsp-6 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   94 SRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELS 297
            ++VYVG L S  + ++LE+ F  FG IR VWVARRPPG+AF+++DD RDA+DA+R LDG        RVELS
Sbjct:    3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74          
BLAST of FC930347 vs. ExPASy Swiss-Prot
Match: SFRS3_MOUSE (Splicing factor, arginine/serine-rich 3 OS=Mus musculus GN=Sfrs3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.418e-14
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   97 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSH 300
            +VYVGNL +  ++ +LE  F  +G +RSVWVAR PPG+AF++F+D RDA DA+RELDG+       RVELS+
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 82          
BLAST of FC930347 vs. ExPASy Swiss-Prot
Match: SFRS3_HUMAN (Splicing factor, arginine/serine-rich 3 OS=Homo sapiens GN=SFRS3 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.418e-14
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   97 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSH 300
            +VYVGNL +  ++ +LE  F  +G +RSVWVAR PPG+AF++F+D RDA DA+RELDG+       RVELS+
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 82          
BLAST of FC930347 vs. ExPASy Swiss-Prot
Match: SFRS3_BOVIN (Splicing factor, arginine/serine-rich 3 OS=Bos taurus GN=SFRS3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.418e-14
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   97 RVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDGKN----GWRVELSH 300
            +VYVGNL +  ++ +LE  F  +G +RSVWVAR PPG+AF++F+D RDA DA+RELDG+       RVELS+
Sbjct:   11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 82          
BLAST of FC930347 vs. ExPASy Swiss-Prot
Match: RBP1_DROME (RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.124e-14
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   85 DKMSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDYRDAQDAIRELDG 270
            D   +VYVGNL S  S+ ++E  F  +G +R+VWVAR PPG+AF++F+D RDA+DA R LDG
Sbjct:    8 DLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDG 69          
The following BLAST results are available for this feature:
BLAST of FC930347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SFRS7_MOUSE2.949e-2042.86Splicing factor, arginine/serine-rich 7 OS=Mus mus... [more]
SFRS7_HUMAN8.580e-2043.12Splicing factor, arginine/serine-rich 7 OS=Homo sa... [more]
SFRS7_BOVIN8.580e-2043.12Splicing factor, arginine/serine-rich 7 OS=Bos tau... [more]
RSP6_CAEEL8.310e-1555.56Probable splicing factor, arginine/serine-rich 6 O... [more]
SFRS3_MOUSE1.418e-1454.17Splicing factor, arginine/serine-rich 3 OS=Mus mus... [more]
SFRS3_HUMAN1.418e-1454.17Splicing factor, arginine/serine-rich 3 OS=Homo sa... [more]
SFRS3_BOVIN1.418e-1454.17Splicing factor, arginine/serine-rich 3 OS=Bos tau... [more]
RBP1_DROME4.124e-1454.84RNA-binding protein 1 OS=Drosophila melanogaster G... [more]
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Properties
Property NameValue
Genbank descriptionC34006E09EF PostHarvC1 Citrus clementina cDNA clone C34006E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930347 ID=FC930347; Name=FC930347; organism=Citrus clementina; type=EST; length=645bp
GAACGAGAAACACTGCGTTTGCTGCTGCTGCTGCTGCTGCTGGAGGCTCC
ATCTCCTTCTCTGCAAATATCTTCAGGTTTCTCTGATAAAATGTCTCGTG
TGTACGTGGGTAACTTGGATTCACGAGTTTCTGAGCGGGATCTTGAGGAT
GAGTTTCGTGTGTTTGGAGTTATTCGAAGTGTTTGGGTTGCTCGGAGGCC
GCCTGGTTATGCTTTTATAGACTTTGATGACTATAGGGATGCACAGGATG
CGATTCGTGAATTAGATGGCAAGAATGGCTGGAGAGTTGAGCTTTCTCAC
AATTCAAGAGGTGGAGGTGGTGGCCGCGGAGGGGGTCGTGGTCGCTCTGG
TGGTTCTGATTTGAAGTGCTATGAGTGTGGTGAGCCTGGTCATTTTGCCC
GTGAATGCCGTCTGCGTGGTGGTTCAGGGAGACGTCGTAGCCGCAGTCCG
AGATATCGCAGGAGCCCAAGTTATGGACGAAGGAGTTACAGCCCTCGTGG
GAGATCCCCAAGACGCCGCAGTGTGTCACCTCGTGGGCGTAGCTATAGCA
GATCACCACCGTACCGTGGGCGTGAGGAGTTGCCATATGCCAACGGAAAT
GGTGCAAGGGATCGTCGCAGAAGCAGGAGCTGAGCAGTGAAAACT
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