FC930350

Overview
NameFC930350
Unique NameFC930350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930350_ssr35 microsatellite FC930350_ssr35:35..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15294 contig Ccv1_Contig15294:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: STP13_ARATH (Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 1.458e-80
Identity = 156/194 (80.41%), Postives = 163/194 (84.02%), Query Frame = 2
Query:  167 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQG--DDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            M GGGF+ S    GVEFEAKITPIVI+SCIMAATGGLMFGYDVGVSGGVT+MP FL+KFFPVVYR+   G   DSNYCKYDNQGLQLFTSSLYLAGLTATFFASY            IAG+FFI GVA N  AQ+LAMLI GRILLGCGVGFANQAVPLFLSEIAP RIRGGLNILFQLNVTIGILFANLVNYG
Sbjct:    1 MTGGGFATSAN--GVEFEAKITPIVIISCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYG 192          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: STP8_ARATH (Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 3.863e-57
Identity = 112/175 (64.00%), Postives = 131/175 (74.86%), Query Frame = 2
Query:  215 FEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNY 739
            F+AK+T  V +  I+AA GGL+FGYD+G+SGGVTAM  FLK+FFP VY R +   ++NYCKYDNQ LQLFTSSLYLA L A+FFAS             +A IFF+ GV     A N+ MLI+GRILLG GVGF NQAVPLFLSEIAP R+RGGLNI+FQL VTIGIL AN+VNY
Sbjct:   14 FDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKKHAHENNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTMQLASIFFLIGVGLAAGAVNIYMLIIGRILLGFGVGFGNQAVPLFLSEIAPARLRGGLNIVFQLMVTIGILIANIVNY 188          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: STP6_ARATH (Sugar transport protein 6 OS=Arabidopsis thaliana GN=STP6 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.794e-54
Identity = 107/175 (61.14%), Postives = 128/175 (73.14%), Query Frame = 2
Query:  215 FEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNY 739
            FEAK+T  V +  ++AA GGL+FGYD+G+SGGV+AM  FLK+FFP V+ R +   ++NYCKYDNQ LQLFTSSLYLA L A+F AS              A IFF+ GV     A NL MLI+GR+ LG GVGF NQAVPLFLSEIAP ++RGGLNI+FQL VTIGIL AN+VNY
Sbjct:   13 FEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWERKKHVHENNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTMQFASIFFLIGVGLTAGAVNLVMLIIGRLFLGFGVGFGNQAVPLFLSEIAPAQLRGGLNIVFQLMVTIGILIANIVNY 187          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: STP7_ARATH (Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.343e-54
Identity = 106/198 (53.54%), Postives = 134/198 (67.68%), Query Frame = 2
Query:  167 MPGGGFSASVPPAGV------EFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            M GG F     P GV      +++ K+T  VI++C++AA GG +FGYD+G+SGGVT+M  FL++FF  VY + +Q  +SNYCKYDNQGL  FTSSLYLAGL +T  AS               GI F+ G   N  A NLAML+ GRI+LG G+GF NQAVPL+LSE+AP  +RGGLN++FQL  TIGI  AN+VNYG
Sbjct:    1 MAGGSFG----PTGVAKERAEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKKKQAHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASIVCGGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGGLNMMFQLATTIGIFTANMVNYG 194          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: STP10_ARATH (Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.286e-52
Identity = 105/193 (54.40%), Postives = 135/193 (69.95%), Query Frame = 2
Query:  167 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGD-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            M GG F +     G  +E  +T  VI++CI+AA GGL+FGYD+G+SGGVT+M  FL KFFP V  + ++   D+ YCK+DNQ LQLFTSSLYLA L A+F AS             I G+ F+ G  FN  A N++MLI+GR+LLG GVGFANQ+ P++LSE+AP +IRG LNI FQ+ +TIGIL ANL+NYG
Sbjct:    1 MAGGAFVSEGGGGGRSYEGGVTAFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGRKVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILVANLINYG 193          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: STP2_ARATH (Sugar transport protein 2 OS=Arabidopsis thaliana GN=STP2 PE=1 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 2.193e-52
Identity = 103/185 (55.68%), Postives = 130/185 (70.27%), Query Frame = 2
Query:  185 SASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNY 739
            S +V      F AK+T  V + C++AA GGLMFGYD+G+SGGVT+M  FL  FFP VY +  +  ++NYCK+D+Q LQLFTSSLYLAG+ A+F +SY            +A IFF+ G   N++AQ L MLI GRILLG G+GF NQ VPLF+SEIAP R RGGLN++FQ  +TIGIL A+ VNY
Sbjct:    5 SMNVEEGTKAFPAKLTGQVFLCCVIAAVGGLMFGYDIGISGGVTSMDTFLLDFFPHVYEKKHRVHENNYCKFDDQLLQLFTSSLYLAGIFASFISSYVSRAFGRKPTIMLASIFFLVGAILNLSAQELGMLIGGRILLGFGIGFGNQTVPLFISEIAPARYRGGLNVMFQFLITIGILAASYVNY 189          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: STP9_ARATH (Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.886e-52
Identity = 104/193 (53.89%), Postives = 135/193 (69.95%), Query Frame = 2
Query:  167 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGD-DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            M GG F +     G  +E  +T  VI++CI+AA GGL+FGYD+G+SGGVT+M  FL KFFP V ++  +   ++ YCK+DNQ LQLFTSSLYLA L ++F AS             + G+ F+ G  FN  A N+AMLIVGR+LLG GVGFANQ+ P++LSE+AP +IRG LNI FQ+ +TIGIL ANL+NYG
Sbjct:    1 MAGGAFVSEGGGGGNSYEGGVTVFVIMTCIVAAMGGLLFGYDLGISGGVTSMEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGRKISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGALNIGFQMAITIGILIANLINYG 193          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: STP1_ARATH (Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.681e-50
Identity = 103/192 (53.65%), Postives = 133/192 (69.27%), Query Frame = 2
Query:  167 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSN-YCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNY 739
            MP GGF   V      +  K+TP V+ +C++AA GGL+FGYD+G+SGGVT+MP FLK+FFP VYR+ Q+   +N YC+YD+  L +FTSSLYLA L ++  AS               GI F AG   N  A+++ MLIVGRILLG G+GFANQAVPL+LSE+AP + RG LNI FQL++TIGIL A ++NY
Sbjct:    1 MPAGGFV--VGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNY 190          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: STP11_ARATH (Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.973e-50
Identity = 104/193 (53.89%), Postives = 133/193 (68.91%), Query Frame = 2
Query:  167 MPGGGFSASVPPAGVEFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQ--QGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNY 739
            M GG F       G ++E ++T  V+++CI+AA GGL+FGYD+G+SGGV +M  FL KFFP V R+ Q  +G ++ YCKYDN+ L LFTSSLYLA L A+F AS             I  + F++G   N  A NL MLI+GR+ LG GVGFANQ+VPL+LSE+AP +IRG LNI FQL +TIGIL AN+VNY
Sbjct:    1 MAGGAFIDESGHGG-DYEGRVTAFVMITCIVAAMGGLLFGYDIGISGGVISMEDFLTKFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFGRKVSMVIGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRGALNIGFQLAITIGILAANIVNY 192          
BLAST of FC930350 vs. ExPASy Swiss-Prot
Match: STA_RICCO (Sugar carrier protein A OS=Ricinus communis GN=STA PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.973e-50
Identity = 103/198 (52.02%), Postives = 132/198 (66.67%), Query Frame = 2
Query:  167 MPGGGFSASVPPAGV------EFEAKITPIVIVSCIMAATGGLMFGYDVGVSGGVTAMPHFLKKFFPVVYRRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYXXXXXXXXXXXXIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPNRIRGGLNILFQLNVTIGILFANLVNYG 742
            M GG    S+ PAGV      +++ K+T  V V+C++AA GG +FGYD+G+SGGV +M  FL+KFF  VY + +   ++NYCKYD+Q L  FTSSLYLAGL A+  A                GI F+ G A N  A NLAML++GRI+LG G+GF NQAVPL+LSE+AP  +RGGLNI+FQL  T GI  AN+VNYG
Sbjct:    1 MAGG----SLAPAGVAKERAEQYQGKVTFAVFVACMVAAVGGSIFGYDIGISGGVISMDAFLEKFFRSVYLKKKHAHENNYCKYDDQRLAAFTSSLYLAGLAASLVAGPITRIYGRRASIISGGISFLIGAALNATAINLAMLLLGRIMLGVGIGFGNQAVPLYLSEMAPTHLRGGLNIMFQLATTSGIFTANMVNYG 194          
The following BLAST results are available for this feature:
BLAST of FC930350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
STP13_ARATH1.458e-8080.41Sugar transport protein 13 OS=Arabidopsis thaliana... [more]
STP8_ARATH3.863e-5764.00Sugar transport protein 8 OS=Arabidopsis thaliana ... [more]
STP6_ARATH1.794e-5461.14Sugar transport protein 6 OS=Arabidopsis thaliana ... [more]
STP7_ARATH2.343e-5453.54Sugar transport protein 7 OS=Arabidopsis thaliana ... [more]
STP10_ARATH1.286e-5254.40Sugar transport protein 10 OS=Arabidopsis thaliana... [more]
STP2_ARATH2.193e-5255.68Sugar transport protein 2 OS=Arabidopsis thaliana ... [more]
STP9_ARATH4.886e-5253.89Sugar transport protein 9 OS=Arabidopsis thaliana ... [more]
STP1_ARATH2.681e-5053.65Sugar transport protein 1 OS=Arabidopsis thaliana ... [more]
STP11_ARATH5.973e-5053.89Sugar transport protein 11 OS=Arabidopsis thaliana... [more]
STA_RICCO5.973e-5052.02Sugar carrier protein A OS=Ricinus communis GN=STA... [more]

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Properties
Property NameValue
Genbank descriptionC34006E12EF PostHarvC1 Citrus clementina cDNA clone C34006E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930350 ID=FC930350; Name=FC930350; organism=Citrus clementina; type=EST; length=743bp
GTCTCATTATCACATACTTCATCTCACAATAATCTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTGTTCTTCTTCTACTTCTTCTTGTTCT
TCTTCGTAATTACGCTTAACGAGAGAATTAGAATTGGAATATCGTTTCAG
TTTTTGATAATTAAGGATGCCAGGTGGTGGATTCTCGGCGTCCGTGCCGC
CGGCCGGAGTCGAGTTTGAGGCCAAGATCACGCCGATTGTTATCGTTTCA
TGCATAATGGCCGCCACTGGAGGCCTCATGTTTGGCTACGATGTTGGTGT
TTCTGGGGGAGTGACGGCGATGCCACACTTCTTGAAGAAGTTCTTTCCAG
TAGTGTATAGGAGGACACAGCAAGGGGATGATAGCAATTACTGCAAGTAC
GATAATCAAGGGCTACAATTGTTCACATCATCCTTGTACTTGGCCGGCTT
AACTGCCACCTTCTTTGCATCATACACAACTAGGAGGCTTGGCAGGAGGC
TGACCATGCTGATTGCTGGTATCTTCTTCATTGCTGGTGTTGCCTTTAAT
GTTGCTGCCCAGAACCTTGCCATGCTCATCGTTGGAAGGATCCTGCTTGG
TTGTGGGGTTGGTTTCGCTAATCAGGCTGTGCCATTGTTCCTATCGGAAA
TTGCTCCNAACAGGATACGTGGAGGGCTTAACATACTCTTTCAGCTTAAC
GTCACCATCGGCATTCTTTTCGCCAACTTGGTCAATTATGGGA
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