FC930356

Overview
NameFC930356
Unique NameFC930356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length321
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15301 contig Ccv1_Contig15301:46..366. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 2.111e-53
Identity = 97/107 (90.65%), Postives = 102/107 (95.33%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA EG+KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFD+T+M+CLPNMVVMAPSDEAEL HMVATAA IDDRPSCFR+PRGNGIG  L
Sbjct:  456 LACEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELCHMVATAAAIDDRPSCFRYPRGNGIGVPL 562          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.048e-52
Identity = 95/107 (88.79%), Postives = 101/107 (94.39%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA EG+KPFCAIYSSF+QR YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFD+TFM+CLPNMVVMAPSDEAEL H+VATAA IDDRPSCFR+PRGNGIG  L
Sbjct:  459 LACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPSDEAELFHIVATAAAIDDRPSCFRYPRGNGIGVEL 565          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 3.370e-51
Identity = 92/107 (85.98%), Postives = 100/107 (93.46%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA EG+KPFCAIYSSF+QR YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFD+TFM+CLPNM+VMAPSDEA+L +MVATA  IDDRPSCFR+PRGNGIG  L
Sbjct:  460 LACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMIVMAPSDEADLFNMVATAVAIDDRPSCFRYPRGNGIGVAL 566          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_MAGSA (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dxs PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.419e-41
Identity = 78/107 (72.90%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA+EG KPFCAIYSSFLQR YDQV HDV LQKLPVRFA+DRAGLVGADG TH G++D+ F+ CLP++V+M PSDEA+L H VATA  IDDRPS FR+PRG G+G  L
Sbjct:  388 LATEGFKPFCAIYSSFLQRAYDQVQHDVVLQKLPVRFAIDRAGLVGADGATHAGSYDMAFLGCLPDIVIMCPSDEADLMHAVATAVSIDDRPSAFRYPRGEGVGIEL 494          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CAUSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter sp. (strain K31) GN=dxs PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.854e-41
Identity = 77/107 (71.96%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIGAVL 321
            LA++G+KPF AIYS+FLQRGYDQVVHDV +Q+LPVRFAMDRAGLVGADGPTH G FD+ FM  LP MV+MA +DE EL HMV+TA  IDDRPS FR+PRG G+G  +
Sbjct:  379 LAADGMKPFVAIYSTFLQRGYDQVVHDVAIQRLPVRFAMDRAGLVGADGPTHAGTFDLGFMGALPGMVLMAAADEVELAHMVSTAVAIDDRPSAFRYPRGEGLGLTI 485          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BRAJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium japonicum GN=dxs PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.129e-41
Identity = 77/104 (74.04%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LASEG KPFCAIYS+FLQRGYDQ+VHDV +Q LPVRFA+DRAGLVGADG TH G+FD  ++ CLPNMV+MA +DEAEL HMVAT   IDDRPS  R+PRG G G
Sbjct:  401 LASEGYKPFCAIYSTFLQRGYDQIVHDVAIQNLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAAADEAELVHMVATQVAIDDRPSSLRYPRGEGRG 504          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_RHOPB (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB18) GN=dxs PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.393e-41
Identity = 78/104 (75.00%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA+EG KPFCAIYS+FLQRGYDQVVHDV +Q LPVRFA+DRAGLVGADG TH G+FD  F+ CLPNMV+MA SDEAEL HMVAT   I+DRPS  R+PRG G G
Sbjct:  382 LAAEGYKPFCAIYSTFLQRGYDQVVHDVAIQSLPVRFAIDRAGLVGADGATHAGSFDNAFLGCLPNMVIMAASDEAELVHMVATQVAINDRPSAVRYPRGEGRG 485          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_BRASO (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain ORS278) GN=dxs PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 7.044e-41
Identity = 77/104 (74.04%), Postives = 87/104 (83.65%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            LA+EG KPFCAIYS+FLQRGYDQ+VHDV +Q LPVRFA+DRAGLVGADG TH G+FD  ++ CLPNMV+MA SDEAEL HMVAT   IDDRPS  R+PRG G G
Sbjct:  382 LAAEGYKPFCAIYSTFLQRGYDQIVHDVCIQSLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAASDEAELVHMVATQVAIDDRPSSVRYPRGEGRG 485          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CAUCR (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus GN=dxs PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.199e-41
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            +A++G+KPF AIYS+FLQRGYDQVVHDV +Q LPVRFAMDRAGLVGADGPTH G+FDI FM  LP MV+MA +DE EL  MVATAA IDDRPS FR+PRG G+G
Sbjct:  379 MAADGMKPFAAIYSTFLQRGYDQVVHDVAIQGLPVRFAMDRAGLVGADGPTHAGSFDIGFMGALPGMVLMAAADEVELARMVATAAEIDDRPSAFRYPRGEGLG 482          
BLAST of FC930356 vs. ExPASy Swiss-Prot
Match: DXS_CAUCN (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=dxs PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.199e-41
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELTHMVATAAVIDDRPSCFRFPRGNGIG 312
            +A++G+KPF AIYS+FLQRGYDQVVHDV +Q LPVRFAMDRAGLVGADGPTH G+FDI FM  LP MV+MA +DE EL  MVATAA IDDRPS FR+PRG G+G
Sbjct:  379 MAADGMKPFAAIYSTFLQRGYDQVVHDVAIQGLPVRFAMDRAGLVGADGPTHAGSFDIGFMGALPGMVLMAAADEVELARMVATAAEIDDRPSAFRYPRGEGLG 482          
The following BLAST results are available for this feature:
BLAST of FC930356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_ORYSJ2.111e-5390.65Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN3.048e-5288.79Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ARATH3.370e-5185.98Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_MAGSA1.419e-4172.901-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_CAUSK1.854e-4171.961-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_BRAJA4.129e-4174.041-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_RHOPB5.393e-4175.001-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_BRASO7.044e-4174.041-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_CAUCR9.199e-4175.001-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_CAUCN9.199e-4175.001-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]

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Properties
Property NameValue
Genbank descriptionC34006F06EF PostHarvC1 Citrus clementina cDNA clone C34006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930356 ID=FC930356; Name=FC930356; organism=Citrus clementina; type=EST; length=321bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAACGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTC
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