FC930361
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.853e-31 Identity = 65/145 (44.83%), Postives = 99/145 (68.28%), Query Frame = 1 Query: 259 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 D R++YVGN+ VTE L+ ++FS GP + CK+I + S+ Y F+ +++ R AA A+ ++NGR + G+ +KVNWA S Q++DTS HF++FV DLSPE+T + + F+ + SDARV+ D TG+S+G+GFVSF N+ Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 148
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.734e-29 Identity = 65/162 (40.12%), Postives = 98/162 (60.49%), Query Frame = 1 Query: 259 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-------------------YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 D R++YVGN+ VTE L+ ++FS GP + CK+I + S Y F+ +++ R AA A+ ++NGR + G+ +KVNWA S Q++DTS HF++FV DLSPE+T + + F+ + SDARV+ D TG+S+G+GFVSF N+ Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 165
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.120e-27 Identity = 63/151 (41.72%), Postives = 95/151 (62.91%), Query Frame = 1 Query: 274 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 +++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++NGR + G+ +KVNWA S Q++DTS HF++FV DLSPE+T + A F+ + SDARV+ D TG+S+G+GFVSF N+ Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 122.479 bits (306), Expect = 2.120e-27 Identity = 63/151 (41.72%), Postives = 95/151 (62.91%), Query Frame = 1 Query: 274 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 +++YVGN+ VTE L+ ++FS GP + CK+I + Y F+ + + R AA A+ ++NGR + G+ +KVNWA S Q++DTS HF++FV DLSPE+T + A F+ + SDARV+ D TG+S+G+GFVSF N+ Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23 Identity = 58/155 (37.42%), Postives = 92/155 (59.35%), Query Frame = 1 Query: 229 IPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDKS-SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 +P+ + G + S R +YVGN+ +TE +L++ F GP+ K++ + +K+ +Y F+ Y A +A+ +LNG+ + +K+NWA+ S Q+ + FN+FV DL+ V D TL F +PS VMWD +TG SRG+GFVSF +Q Sbjct: 61 VPANAITGGRETSD-RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS-QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 213
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15 Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSF 675 +VYVG + +V+EPLL E+F GPV + + YGF+ + A AI +N L+G+PI+VN A A + D NIF+ +L PE+ + L+ FS + ++M D TG S+G+ F++F Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15 Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSF 675 +VYVG + +V+EPLL E+F GPV + + YGF+ + A AI +N L+G+PI+VN A A + D NIF+ +L PE+ + L+ FS + ++M D TG S+G+ F++F Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15 Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSF 675 +VYVG + +V+EPLL E+F GPV + + YGF+ + A AI +N L+G+PI+VN A A + D NIF+ +L PE+ + L+ FS + ++M D TG S+G+ F++F Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14 Identity = 47/141 (33.33%), Postives = 73/141 (51.77%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 S+YVG + +TE LL +VFS GP+ ++ R K Y +++Y D + AI LN + G+P ++ W+ R+ SG NIF+ +L P + + L FS + +V D+ G SRGFGFV F+ + Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSG--NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDE-NGNSRGFGFVHFKEE 188
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14 Identity = 49/146 (33.56%), Postives = 82/146 (56.16%), Query Frame = 1 Query: 277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQP--IKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684 ++++G + VTE +Q+V+++ G KLIR + Y F+ + A+ A +S+N + + G K+NWA G RE + + ++IFV DLSP V + +++ F S Y SC A++M D +T SRG+GFV F ++ Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA-MSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238 The following BLAST results are available for this feature:
BLAST of FC930361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930361 ID=FC930361; Name=FC930361; organism=Citrus clementina; type=EST; length=684bpback to top |