FC930361

Overview
NameFC930361
Unique NameFC930361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930361_ssr125 microsatellite FC930361_ssr125:125..142. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11971 contig Ccv1_Contig11971:7..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.853e-31
Identity = 65/145 (44.83%), Postives = 99/145 (68.28%), Query Frame = 1
Query:  259 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            D    R++YVGN+   VTE L+ ++FS  GP + CK+I +  S+  Y F+ +++ R AA A+ ++NGR + G+ +KVNWA   S Q++DTS HF++FV DLSPE+T   + + F+ +   SDARV+ D  TG+S+G+GFVSF N+
Sbjct:    4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 148          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.734e-29
Identity = 65/162 (40.12%), Postives = 98/162 (60.49%), Query Frame = 1
Query:  259 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS-------------------YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            D    R++YVGN+   VTE L+ ++FS  GP + CK+I +   S                   Y F+ +++ R AA A+ ++NGR + G+ +KVNWA   S Q++DTS HF++FV DLSPE+T   + + F+ +   SDARV+ D  TG+S+G+GFVSF N+
Sbjct:    4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 165          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.120e-27
Identity = 63/151 (41.72%), Postives = 95/151 (62.91%), Query Frame = 1
Query:  274 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            +++YVGN+   VTE L+ ++FS  GP + CK+I     +  Y F+ + + R AA A+ ++NGR + G+ +KVNWA   S Q++DTS            HF++FV DLSPE+T   + A F+ +   SDARV+ D  TG+S+G+GFVSF N+
Sbjct:    7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.120e-27
Identity = 63/151 (41.72%), Postives = 95/151 (62.91%), Query Frame = 1
Query:  274 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS--YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            +++YVGN+   VTE L+ ++FS  GP + CK+I     +  Y F+ + + R AA A+ ++NGR + G+ +KVNWA   S Q++DTS            HF++FV DLSPE+T   + A F+ +   SDARV+ D  TG+S+G+GFVSF N+
Sbjct:    7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 58/155 (37.42%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  229 IPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI--RKDKS-SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            +P+  +  G + S  R +YVGN+   +TE +L++ F   GP+   K++  + +K+ +Y F+ Y     A +A+ +LNG+ +    +K+NWA+ S Q+  +   FN+FV DL+  V D TL   F  +PS     VMWD +TG SRG+GFVSF +Q
Sbjct:   61 VPANAITGGRETSD-RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS-QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 213          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSF 675
            +VYVG +  +V+EPLL E+F   GPV    +    +      YGF+ +     A  AI  +N   L+G+PI+VN A A  +  D     NIF+ +L PE+ +  L+  FS +       ++M D  TG S+G+ F++F
Sbjct:   14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSF 675
            +VYVG +  +V+EPLL E+F   GPV    +    +      YGF+ +     A  AI  +N   L+G+PI+VN A A  +  D     NIF+ +L PE+ +  L+  FS +       ++M D  TG S+G+ F++F
Sbjct:   14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.425e-15
Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL----IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVDDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSF 675
            +VYVG +  +V+EPLL E+F   GPV    +    +      YGF+ +     A  AI  +N   L+G+PI+VN A A  +  D     NIF+ +L PE+ +  L+  FS +       ++M D  TG S+G+ F++F
Sbjct:   14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 47/141 (33.33%), Postives = 73/141 (51.77%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVDDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            S+YVG +   +TE LL +VFS  GP+   ++ R    K    Y +++Y D  +   AI  LN   + G+P ++ W+      R+  SG  NIF+ +L P + +  L   FS +      +V  D+  G SRGFGFV F+ +
Sbjct:   51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSG--NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDE-NGNSRGFGFVHFKEE 188          
BLAST of FC930361 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 49/146 (33.56%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  277 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQP--IKVNWAYASGQREDT---SGHFNIFVDDLSPEVTDATLFACF-SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 684
            ++++G +   VTE  +Q+V+++ G     KLIR       + Y F+ +     A+ A +S+N + + G     K+NWA   G RE +   +  ++IFV DLSP V +  +++ F S Y SC  A++M D +T  SRG+GFV F ++
Sbjct:   94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA-MSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238          
The following BLAST results are available for this feature:
BLAST of FC930361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
TIAR_HUMAN1.853e-3144.83Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
TIAR_MOUSE1.734e-2940.12Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
TIA1_MOUSE2.120e-2741.72Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN2.120e-2741.72Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
PUB1_YEAST1.089e-2337.42Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
SF3B4_RAT1.425e-1534.06Splicing factor 3B subunit 4 OS=Rattus norvegicus ... [more]
SF3B4_MOUSE1.425e-1534.06Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf... [more]
SF3B4_HUMAN1.425e-1534.06Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]
PABP_KLULA1.207e-1433.33Polyadenylate-binding protein, cytoplasmic and nuc... [more]
YG41_SCHPO1.576e-1433.56Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC34006F11EF PostHarvC1 Citrus clementina cDNA clone C34006F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930361 ID=FC930361; Name=FC930361; organism=Citrus clementina; type=EST; length=684bp
TTTTTTTTTTTGGTTTTTTTTTTCTTTTCCTCATTTTCTCGAGAAACCCT
AACGAAATTTTCTCGGGAACCAAACATTTTACACCTTCTCGGATTCTGAA
GGAAAATGCAGCACCAGAGGCTGAAGCAGCAGCAGCAGCAGCAACAACAA
GCACTGATGCAGCAAGCGCTTCTCCAACAACAGTCTCTCTATCATCCCGG
CCTCTTAGCCGCTCCTCAGATTGAACCAATCCCAAGTGGAAATCTGCCTC
CTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGAAACATACAT
ACACAGGTGACAGAACCTCTTCTCCAGGAGGTCTTTTCAAGTACTGGTCC
AGTGGAAGGCTGCAAGCTTATTAGGAAGGACAAGTCATCATACGGATTTA
TTCACTATTTTGATCGCAGATCGGCTGCTATGGCTATACTTTCTCTTAAT
GGAAGGCATCTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCCAG
TGGTCAGAGGGAAGATACATCAGGTCATTTTAACATTTTTGTTGATGATC
TGAGCCCAGAAGTTACTGATGCTACGTTGTTTGCGTGCTTTTCTGTTTAT
CCCAGTTGTTCGGATGCAAGAGTTATGTGGGATCAGAAGACTGGGCGTTC
TAGAGGCTTTGGCTTTGTTTCTTTCCGGAACCAG
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