FC930369

Overview
NameFC930369
Unique NameFC930369
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9817 contig Ccv1_Contig9817:6..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 3
Query:  516 MALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNE 698
            MALPVSAIGF G+EKRLE+SFFEPG+FADP G+GLRSLSK Q+     PAECTIV S SN+
Sbjct:    3 MALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSND 63          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 45/63 (71.43%), Postives = 50/63 (79.37%), Query Frame = 3
Query:  516 MALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNEYL 704
            MALP SAIGF GYEKRLE+SFFE   FADP G+GLR+L+K QI    EPAECTIV S SN+YL
Sbjct:    1 MALPASAIGFEGYEKRLEISFFESSFFADPDGKGLRALNKSQIDEILEPAECTIVDSLSNQYL 63          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 3
Query:  519 ALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNE 698
            ALPVSAIGF G+EKRLE+SFFEPG+FADP G+GLRSLSK Q+     PAECTIV S SN+
Sbjct:    4 ALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSND 63          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.127e-17
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 3
Query:  513 KMALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNEYL 704
            +M LPVSAIGF G+EKRLE+SF EPG+FADP G+GLRSLSK Q+     PAECTIV + SN+Y+
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYV 65          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 3
Query:  513 KMALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNEYL 704
            +M LPVSAIGF G+EKRLE+SF EPG+F+DP G+GLRSLSK Q+     PAECTIV + SN+Y+
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFSDPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYV 65          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.190e-17
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 3
Query:  516 MALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNEYL 704
            M LPVSAIGF G+EKRLE+SF EPG+FADP G+GLRSL+K Q+     PAECTIV + SN+Y+
Sbjct:    1 MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLTKAQLDEILGPAECTIVDNLSNDYV 63          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.084e-17
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 3
Query:  516 MALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSN 695
            MAL  SAIGF GYEKRLE+SFFE G+F+DP GRGLR+LSK Q+    +PAECTIVSS SN
Sbjct:    1 MALSTSAIGFEGYEKRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSN 60          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 3
Query:  516 MALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSN 695
            MAL  SAIGF GYE RLE+SFFE G+F+DP GRGLR+LSK Q+    +PAECTIVSS SN
Sbjct:    1 MALSTSAIGFEGYENRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSN 60          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM_DAUCA (S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.525e-15
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 3
Query:  516 MALPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNEYL 704
            M+  VSAIGF G+EKRLE+SFFEP  FADP G+GLR LSK+Q+     PAECTIV+S SNE++
Sbjct:    1 MSSEVSAIGFEGFEKRLEISFFEPSFFADPEGKGLRVLSKNQLDEFLGPAECTIVASLSNEHV 63          
BLAST of FC930369 vs. ExPASy Swiss-Prot
Match: DCAM2_ARATH (S-adenosylmethionine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 40/61 (65.57%), Postives = 49/61 (80.33%), Query Frame = 3
Query:  522 LPVSAIGFGGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQIG*NTEPAECTIVSSXSNEYL 704
            + +SAIGF GYEKRLEV+FFEPG+F D  G+GLR+L+K QI    +PAECTIVSS SN+ L
Sbjct:    1 MAMSAIGFEGYEKRLEVTFFEPGLFLDTQGKGLRALAKSQIDEILQPAECTIVSSLSNDQL 61          
The following BLAST results are available for this feature:
BLAST of FC930369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
DCAM_NICSY3.282e-1873.77S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_CATRO5.599e-1871.43S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_TOBAC1.247e-1773.33S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_SOLTU2.127e-1767.19S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_DATST4.740e-1765.63S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_SOLCI6.190e-1766.67S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_IPONI8.084e-1771.67S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_IPOBA3.072e-1670.00S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_DAUCA1.525e-1565.08S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM2_ARATH4.436e-1565.57S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34006G09EF PostHarvC1 Citrus clementina cDNA clone C34006G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930369 ID=FC930369; Name=FC930369; organism=Citrus clementina; type=EST; length=712bp
GAAAAACGAAACGGACGGAAGGAAATCGAAATTCGTTTTGTGAAACAGAG
TTAAAAATCAACCCTTCTTTAATCCTCAAGGAATTTTATTATTTTCTTGG
TCTCTGAATCGAGGGTTTTGCTTCTTGGTTTAGTGGGTTTGTTTTCGTTA
TATTATCTGAGAAAGGCTGAATGATCTAATGGAGTCAAAAGGTGGTAAGA
AGAAGTCTAGCAGTAGTTCCTTATTCTACGAAGCTCCTCTTGGTTACAGC
ATTGAAGACGTTCGACCTCACGGTGGCATAAAGAAGTTCAGATCAGCTGC
TTACTCAAACTGCGTCCGCAAACCATCCTGAGATCGTCCAATTTGTCCCA
TACCCCCCCAAAAAAAAGCTCACTACTACTGCAATTTTAATTTTTTTTAG
TTTTAGCCGTCTTAATACTGCAATTTACTTGGCCTATTTCTTTTTCGACT
TCCCTCGTTCTCTCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCATTTGT
TTTCTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGGAGG
TTATGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTG
ATCCTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCAAATTGGATGA
AATACTGAACCTGCGGAATGCACAATTGTTTCTTCGNTGTCAAATGAATA
TCTTTGATCATA
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