FC930371

Overview
NameFC930371
Unique NameFC930371
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4770 contig Ccv1_Contig4770:71..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930371 vs. ExPASy Swiss-Prot
Match: WOX8_ORYSJ (WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. japonica GN=WOX8 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.810e-53
Identity = 107/168 (63.69%), Postives = 132/168 (78.57%), Query Frame = 2
Query:  167 DGGDTSNGL-CVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNE-IAGMRMGNPYFDPFVASGSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVVPNNAESEAETVTHAESRKQNPESIQSL 664
            D G    GL  VKVMTDEQME+LRKQI++YA ICEQLV+MH+  +AQ + IAGMR+GN Y DP +  G  K+TARQRWTPTP QLQILE+++D+  GTP KQKI+D+TAEL++HGQISETNVYNWFQNRRAR KRKQ+ +  NNAESEAE    + + K+ P+S + L
Sbjct:   16 DRGGGEGGLGYVKVMTDEQMEVLRKQISIYATICEQLVEMHRALTAQQDSIAGMRLGNLYCDPLMVPGGHKITARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQAALPNNNAESEAEADEESPTDKK-PKSDRPL 182          
BLAST of FC930371 vs. ExPASy Swiss-Prot
Match: WOX13_ARATH (WUSCHEL-related homeobox 13 OS=Arabidopsis thaliana GN=WOX13 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.435e-51
Identity = 105/188 (55.85%), Postives = 126/188 (67.02%), Query Frame = 2
Query:  122 PNFQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASGSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG---VVPNNAESEAETVTHA--ESRKQNPESIQSLED 670
            PN      ++      G     G+ VKVMTDEQ E LRKQIA+Y  ICE+LV+MHK  +AQ ++AG RMG  Y DP ++S   K+TARQRWTPTP QLQILE ++D+  GTP KQKI+D+T EL++HGQI+E NVYNWFQNRRAR KRKQ G      NN ESE ET   A  E R   PES+  L D
Sbjct:   10 PNNHHSSNLQGIDVNGGSGAGGGMYVKVMTDEQYETLRKQIAIYGTICERLVEMHKTLTAQQDLAGGRMGGLYADPMMSSLGHKMTARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRKQHGGGSSGNNNGESEVETEVEALNEKRVVRPESLLGLPD 197          
BLAST of FC930371 vs. ExPASy Swiss-Prot
Match: WOX14_ARATH (WUSCHEL-related homeobox 14 OS=Arabidopsis thaliana GN=WOX14 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.777e-39
Identity = 85/167 (50.90%), Postives = 115/167 (68.86%), Query Frame = 2
Query:  143 EMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIA-GMR-MGNPYFDPFVASGSQ-KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVVPNNAESEAETVTHAESR 634
            EM+R+ Q      +     +VMT+EQME+LRKQIAVYA+IC+QLV +H   S+ + ++ G+R M   YFDP  AS S  +++ R RWTPT  QLQILE +YDE  GTP +++I+++  EL++HGQI+ETNVYNWFQNRRAR KRKQ      N +++   VT  E R
Sbjct:   16 EMDREIQ------NGAYSGRVMTEEQMEILRKQIAVYAVICDQLVLLHNSLSSYHPLSSGVRPMVGGYFDPMGASSSSHRISTRHRWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRKQPQTTTANGQADDVAVTTEERR 176          
BLAST of FC930371 vs. ExPASy Swiss-Prot
Match: WOX10_ARATH (Putative WUSCHEL-related homeobox 10 OS=Arabidopsis thaliana GN=WOX10 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.887e-35
Identity = 79/151 (52.32%), Postives = 104/151 (68.87%), Query Frame = 2
Query:  200 KVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIA-GMR-MGNPYFDPFVASGSQK-LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ---SGVVPNNAESEAETVTHAESR 634
            +VMTDEQME LRKQIA+YA++C+QLV +H   S+   ++ GM  M   YFDP VAS S   ++ R RWTPT  QLQILE++Y E  GTP  ++I+++T EL++HGQI E NVY+WFQNRRAR KRKQ   + +  + A+  A T T    R
Sbjct:   13 RVMTDEQMETLRKQIAIYAVLCDQLVFLHNSLSSVPLLSSGMNPMRGEYFDPMVASSSAHGMSTRPRWTPTTTQLQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNRRARSKRKQPPTTTITSSQADDAAVTTTEERGR 163          
BLAST of FC930371 vs. ExPASy Swiss-Prot
Match: WOX5_ORYSJ (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. japonica GN=WOX5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  356 ASGSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 571
            AS +    A  RWTPT  Q+ +LE +Y +   TP  ++IQ +TA L +HG I   NV+ WFQN +AR ++KQ
Sbjct:   33 ASAAAAALANARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQ 104          
BLAST of FC930371 vs. ExPASy Swiss-Prot
Match: WOX5_ORYSI (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. indica GN=WOX5 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  356 ASGSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 571
            AS +    A  RWTPT  Q+ +LE +Y +   TP  ++IQ +TA L +HG I   NV+ WFQN +AR ++KQ
Sbjct:   33 ASAAAAALANARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQ 104          
The following BLAST results are available for this feature:
BLAST of FC930371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
WOX8_ORYSJ2.810e-5363.69WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. ... [more]
WOX13_ARATH3.435e-5155.85WUSCHEL-related homeobox 13 OS=Arabidopsis thalian... [more]
WOX14_ARATH8.777e-3950.90WUSCHEL-related homeobox 14 OS=Arabidopsis thalian... [more]
WOX10_ARATH5.887e-3552.32Putative WUSCHEL-related homeobox 10 OS=Arabidopsi... [more]
WOX5_ORYSJ2.038e-1144.44WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. ... [more]
WOX5_ORYSI2.038e-1144.44WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. ... [more]
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Properties
Property NameValue
Genbank descriptionC34006G11EF PostHarvC1 Citrus clementina cDNA clone C34006G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930371 ID=FC930371; Name=FC930371; organism=Citrus clementina; type=EST; length=672bp
GATATAAAAATGAAAGAAATGGTTTGAGTTTGGAAGTGGGTAGTGAAGGG
TGGGAAAAAGAAAAAAGAGAAAAAGCCAAAAAGAAAAAAAAAAGAAAATT
CAATCAATGAAAATGGAGTGGCCAAATTTTCAACAAGGAGGAGAAATGGA
GAGGCAGTTTCAGCAAGATGGAGGGGACACTAGTAATGGGTTGTGCGTGA
AAGTGATGACTGATGAACAAATGGAGTTGCTCAGGAAACAGATCGCTGTT
TATGCTATGATTTGTGAGCAGCTTGTTCAGATGCACAAAGTCTTCTCTGC
TCAAAATGAAATCGCTGGAATGAGAATGGGGAATCCATACTTTGATCCCT
TTGTGGCATCTGGCAGCCAGAAGCTCACTGCCAGGCAACGGTGGACCCCG
ACACCTGCACAGCTCCAAATCCTTGAGCATGTTTACGATGAATGCAAGGG
GACTCCTCGCAAACAGAAGATCCAGGATATGACCGCTGAATTGGCAAAAC
ATGGCCAAATTTCTGAAACAAATGTGTATAACTGGTTTCAGAATAGGAGA
GCCCGTTTAAAGAGAAAGCAATCAGGTGTGGTTCCAAACAATGCAGAATC
AGAAGCAGAGACAGTGACACATGCTGAATCCAGGAAGCAAAACCCGGAAA
GCATCCAGTCATTGGAGGATTC
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