FC930377

Overview
NameFC930377
Unique NameFC930377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14112 contig Ccv1_Contig14112:9..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930377 vs. ExPASy Swiss-Prot
Match: USF_AQUPY (Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.741e-17
Identity = 63/204 (30.88%), Postives = 96/204 (47.06%), Query Frame = 2
Query:  152 IQIQRDDTTFDAYVVG-KEDAPGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALIPDLYRGKVGLDTAEAQHLMSG-----LDWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXXSGGPYEVHIYPGSAHAFMN 730
            ++ +++      Y+   K   PG++V+ EWWG++  + N      +    GF A  PD Y GK   +  +A  LM+      +D   A+    ASV++LK       KKVGVTG+C GG L++  +   P+ +DA V FYG+P     D    K P+     E D FV   +V            +G   +V +Y G  HAF+N
Sbjct:    5 VEFEKNGVKVRGYIATPKWGGPGVIVIHEWWGLESPLSNIKEICDRFAQEGFVAFAPDFYEGKYADNPDDAGKLMTDMFENRMDKVDAI--FKASVDFLKECRYTSPKKVGVTGFCCGGTLSMYFAGKFPDLIDASVPFYGLPQITKIDAENIKVPIFFILAEKDEFVNNDEV---IDIAKKVWKNGVDVKVKVYSGVTHAFLN 203          
BLAST of FC930377 vs. ExPASy Swiss-Prot
Match: DLHH_AQUAE (Putative carboxymethylenebutenolidase OS=Aquifex aeolicus GN=aq_1997 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 58/202 (28.71%), Postives = 95/202 (47.03%), Query Frame = 2
Query:  152 IQIQRDDTTFDAYVVGKEDA-PGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALIPDLYRGKVGLDTAEAQHLMSGL---DWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXXSGGPYEVHIYPGSAHAFMN 730
            ++ +++      Y+   + A P ++V  EWWG++  + N      +L + GF A  PD Y+G+   +  +A  LM+ +         +   ASV ++K       KKVG+TG+C GG LA+  +   PE VDA + FYG+P     +    K P+     E D FV   +V            +G   +V ++ G  HAF+N
Sbjct:    5 VEFEKNGVKVRGYIATPKWAGPAVLVFHEWWGLESPLSNIKEICDKLADEGFVAFAPDFYKGQYADNPDDAGKLMTEMFEKRMDEVDRIFQASVEFVKECRYTYPKKVGITGFCCGGTLAMYFAAKFPEMVDASLPFYGLPQLTQINAENIKVPIFFILAEKDEFVNNDEV---IDIAKTVWKNGVDVQVKVFSGVTHAFLN 203          
BLAST of FC930377 vs. ExPASy Swiss-Prot
Match: YGHX_ECOLI (Putative uncharacterized protein yghX OS=Escherichia coli (strain K12) GN=yghX PE=5 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13
Identity = 54/179 (30.17%), Postives = 89/179 (49.72%), Query Frame = 2
Query:  212 PGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDLYRGKVGL--DTAEAQHLMSGLDWPGAVKDIHASVNWLKA--NGSKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXXSGGPYEVHIYPGSAHAFMNIS 736
            P +VVV E  G++  I++ A ++++   G+ AL PD      G   +  + + L   +D    + D  A++ +++     + KVG+TG+C GG ++ A++V  PE+   V FYG   P  AD  + +AP+  HF ELD  +     +           +   YE +IYPG  H F N S
Sbjct:   82 PAVVVVHENRGLNPYIEDVARRVAKA--GYIALAPDGLSSVGGYPGNDDKGRELQQQVDPTNLMNDFFAAIEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACAVPFYGRQAP-TADVAKIEAPLLLHFAELDTRIN----EGWPAYEAALKANNKVYEAYIYPGVNHGFHNDS 253          
The following BLAST results are available for this feature:
BLAST of FC930377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
USF_AQUPY1.741e-1730.88Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1[more]
DLHH_AQUAE4.741e-1528.71Putative carboxymethylenebutenolidase OS=Aquifex a... [more]
YGHX_ECOLI3.397e-1330.17Putative uncharacterized protein yghX OS=Escherich... [more]
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Properties
Property NameValue
Genbank descriptionC34006H06EF PostHarvC1 Citrus clementina cDNA clone C34006H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930377 ID=FC930377; Name=FC930377; organism=Citrus clementina; type=EST; length=740bp
GACTGAGTAGATAATGCTAGCAGCTGCTTCGAGAATCTTGAGCAGATCAA
CTCCGCTTCTTAAGCCCTCTCTCGCAAGGACTCACTTTCCCGCCGGTTAT
CGCTTTGCAGTCAGATCAATGGCAGACTCTGCAGCTTCGCCCTTCAAGAA
AATCCAGATTCAGAGAGATGATACTACTTTTGATGCATATGTGGTTGGCA
AAGAAGACGCCCCTGGGATTGTTGTAGTTCAGGAGTGGTGGGGTGTTGAT
TTTGAGATCAAGAACCATGCTGTCAAAATCTCCCAACTAAACCCTGGATT
CAAGGCACTTATACCAGATTTATATCGGGGAAAGGTTGGTTTGGATACTG
CTGAAGCACAGCACTTGATGAGTGGTCTTGATTGGCCAGGTGCTGTCAAG
GATATCCACGCTTCAGTTAATTGGCTTAAGGCAAATGGTTCCAAGAAGGT
TGGCGTGACTGGATATTGCATGGGAGGTGCTCTCGCTATTGCAAGTTCTG
TCTTAGTTCCTGAGGTTGATGCTGTTGTTTCATTTTATGGGGTTCCCCCA
CCTGAGCTCGCCGATCCTACCCAGGCTAAGGCACCTGTTCAAGCTCATTT
TGGGGAGCTTGACAATTTTGTTGGCTTTTCAGATGTGAAAACTGCCAAAG
CATTGGAGGAAAAGCTGAAAGCATCTGGTGGTCCATATGAGGTACATATT
TATCCTGGCAGTGCACATGCTTTCATGAACATTTCTCCGG
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