FC930379

Overview
NameFC930379
Unique NameFC930379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14342 contig Ccv1_Contig14342:52..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930379 vs. ExPASy Swiss-Prot
Match: Y3972_ARATH (Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.135e-72
Identity = 140/207 (67.63%), Postives = 160/207 (77.29%), Query Frame = 2 
Query:  128 MSRRPVNPARRLADGGSIPFVGSAHSKSRSSPXXXXXXXXXXXXXXXXXXYSGSGKTIIEKEALSKVEGVVSCTLEVLRALPVLKKAYGDSMLKILHVGPETCSVVSKLLKEEDTEAWGVEPYDLDDADANCRSLVRKGIVRVADIKFPLPYRAKSFSLVIVSDAVDYLSPKYLNRTLPELARVSVDGVVIFAGYPGQHRAKSSELS 748
            M+RR V   RR+ DGGS PF G+ HSKSRSSP                  YSG G     KE +SKV G  SCT EV RA+PVLKKAYGD M K+LHVGP+TCSVVS LLKEE+TEAWGVEPYD++DAD++C+S V KG+VRVADIKFPLPYRAKSFSLVIVSDA+DYLSPKYLN+T+PELARV+ DGVV+FAG PGQ RAK +ELS
Sbjct:    1 MARRQVGSTRRVGDGGSFPFAGALHSKSRSSPLLSICLVLVGACLLIGYAYSGPGIFKSIKE-VSKVTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLLKEEETEAWGVEPYDIEDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPELARVASDGVVLFAGLPGQQRAKVAELS 206
The following BLAST results are available for this feature:
BLAST of FC930379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3972_ARATH1.135e-7267.63Uncharacterized protein At3g49720 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC34006H08EF PostHarvC1 Citrus clementina cDNA clone C34006H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930379 ID=FC930379; Name=FC930379; organism=Citrus clementina; type=EST; length=749bp
GATTTAAATCAAACCAAGTTGAAAAACAAATCCCATTTCCCTCTTTCCCA
CTGCGAACAGATCTGGATCGTGCTCTATACTCGACCCATCTGATCGTTGA
TCTCAGGCTCTCCATTGTTACATAGTCATGTCAAGGAGGCCAGTGAATCC
TGCTCGACGCCTTGCTGATGGTGGAAGCATCCCTTTTGTGGGTTCAGCAC
ATTCAAAATCACGCTCATCACCTTTGCTGTCTGTTATACTTTTGGCTGTG
GGTGCAGTACTCCTTATTGGCTATTTATACAGTGGGTCAGGTAAAACAAT
CATTGAAAAAGAGGCATTGAGTAAAGTTGAAGGCGTTGTTTCGTGCACTT
TAGAAGTCCTGAGAGCATTACCTGTTCTTAAGAAGGCATATGGTGACAGC
ATGCTCAAAATACTACATGTAGGACCTGAAACTTGTTCAGTGGTATCTAA
ATTGTTGAAAGAGGAGGATACTGAAGCATGGGGTGTTGAACCATATGACT
TAGACGACGCTGATGCCAACTGCAGGAGTCTTGTGCGAAAAGGCATTGTG
CGGGTGGCCGATATTAAGTTTCCTCTGCCCTATCGGGCAAAGTCATTTTC
TCTAGTGATAGTGTCAGATGCTGTGGATTACTTGTCTCCAAAGTACCTTA
ACAGAACTCTTCCAGAATTGGCTAGGGTATCTGTTGATGGAGTAGTAATA
TTTGCTGGTTATCCTGGTCAGCATAGAGCTAAAAGTTCTGAACTATCCA
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