FC930383

Overview
NameFC930383
Unique NameFC930383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length374
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15147 contig Ccv1_Contig15147:1..374. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930383 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.297e-23
Identity = 51/73 (69.86%), Postives = 57/73 (78.08%), Query Frame = 1
Query:  151 VPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPL 369
            VP    K + DPLKRVP  KP F+LSQ+KKAIPPHCF+RSVLRSFSYVV+DLTIAF  YY+A  Y H LP PL
Sbjct:    9 VPPANRKSEVDPLKRVPFEKPQFSLSQIKKAIPPHCFQRSVLRSFSYVVYDLTIAFCLYYVATHYFHLLPGPL 81          
BLAST of FC930383 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.070e-21
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 1
Query:  151 VPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPL 369
            V  +P K ++D LKRVPC  PPFT+ ++KKAIPPHCF+RS+ RSFSY++ D+ +A  FYY+A TY   LPHPL
Sbjct:    9 VSPSPKKSETDTLKRVPCETPPFTVGELKKAIPPHCFKRSIPRSFSYLIWDIIVASCFYYVATTYFPLLPHPL 81          
BLAST of FC930383 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.660e-20
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  151 VPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPL 369
            VP++  K ++D  KRVPC KPPF++  +KKAIPPHCF+RS+ RSFSY++ D+ IA  FYY+A  Y   LP PL
Sbjct:    9 VPTSSKKSETDTTKRVPCEKPPFSVGDLKKAIPPHCFKRSIPRSFSYLISDIIIASCFYYVATNYFSLLPQPL 81          
BLAST of FC930383 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.305e-19
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  184 PLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHP 366
            PL RVP +KPPFT+ Q+KKAIPPHCF+RS+L SFSYVV+DL+ AF+F YIA TY H LP P
Sbjct:   25 PLSRVPNTKPPFTVGQLKKAIPPHCFQRSLLTSFSYVVYDLSFAFIF-YIATTYFHLLPQP 84          
BLAST of FC930383 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.217e-15
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  169 KVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPL 369
            +    PL       PPFT+S +K+AIPPHCF+RSV+RS  Y+VHD  IA++FY++AD YI  LP PL
Sbjct:    8 RTSQKPLMERVSVDPPFTVSDLKQAIPPHCFKRSVIRSSYYIVHDAIIAYIFYFLADKYIPILPAPL 74          
The following BLAST results are available for this feature:
BLAST of FC930383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FD6E2_SOYBN1.297e-2369.86Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU2.070e-2158.90Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH6.660e-2056.16Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN3.305e-1970.49Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL2.217e-1553.73Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
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Properties
Property NameValue
Genbank descriptionC34007A02EF PostHarvC1 Citrus clementina cDNA clone C34007A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930383 ID=FC930383; Name=FC930383; organism=Citrus clementina; type=EST; length=374bp
GAGCCGAACGTTTACAACTCACAACGCGGCCGGCGAAGGCGGGAAAGAGA
GAGGGAGAGAAAGTGAGGTCTCTCATTTTCTTCTTCTTTGCAGTCCAAGT
GCTTCGCTTCTTCAGGTTGACGAACAATGGGTGCAGGTGGACGAATGGCT
GTACCTTCAACGCCCATGAAGGTGGATTCTGATCCCTTGAAGCGAGTTCC
ATGCTCAAAGCCACCATTCACACTCAGCCAAGTAAAGAAAGCTATCCCAC
CTCACTGTTTTGAGCGGTCTGTTCTCCGTTCATTCTCCTACGTTGTTCAT
GACCTCACCATTGCCTTTGTCTTTTACTACATTGCCGACACTTACATTCA
CCAACTTCCTCACCCTCTCCTTTA
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