FC930386

Overview
NameFC930386
Unique NameFC930386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930386_ssr48 microsatellite FC930386_ssr48:48..62. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15148 contig Ccv1_Contig15148:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930386 vs. ExPASy Swiss-Prot
Match: CO058_MOUSE (UPF0580 protein C15orf58 homolog OS=Mus musculus PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.184e-28
Identity = 67/173 (38.73%), Postives = 102/173 (58.96%), Query Frame = 3
Query:  207 PVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLH 725
            P++  DS +   W  R++ GLFRY +   +T+++PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF K+   EVLF+ +    G     P+ P   +    +V INVSP+E+GHVLL+P   + LPQR+      + L     + +P FR+G+NSLG  A++NHLH
Sbjct:   55 PLSRFDSALRSAWRQRLELGLFRYRLEDLQTQILPGSVGFVAQLNIERGIQRRRPQ-NIRSVRQEFDPEQFNFNKIRPGEVLFRMQREPKG-----PATP--KQEDDVLVVINVSPLEWGHVLLVPAPAQGLPQRLLPGVLRVGLEAVLLSLHPGFRVGFNSLGGLASVNHLH 219          
BLAST of FC930386 vs. ExPASy Swiss-Prot
Match: CO058_BOVIN (UPF0580 protein C15orf58 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27
Identity = 65/174 (37.36%), Postives = 98/174 (56.32%), Query Frame = 3
Query:  204 PPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLH 725
            PP++  DS +   W  R++ GLFRY +    T+ +PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF ++   EVLF+    +D            V+    +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH
Sbjct:   54 PPLSHFDSALCSAWRQRMELGLFRYPLGELPTQTLPGTVGFVAQLNVERGVQRRCPQ-NIKSVRQEFDPEQFNFNQIRPGEVLFRLHRKQD--------CSGTVQQEDILVVINVSPLEWGHVLLVPEPARGLPQRLLPGALRAGVEAVLLSSHPGFRVGFNSLGGLASVNHLH 218          
BLAST of FC930386 vs. ExPASy Swiss-Prot
Match: CO058_XENTR (UPF0580 protein C15orf58 homolog OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.378e-27
Identity = 73/230 (31.74%), Postives = 118/230 (51.30%), Query Frame = 3
Query:  123 LPLYAFKRVNKFKTEMGVHG------HEVREPEPPVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASE-DGEVQFH----------------------PSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLH 725
            LP    +  N F+ +    G       E  E    ++  D  +  +WE+++  GLFRY +   +T+++PG   ++AQLN  R + +R  E  +  V Q F+ N+FN+ K+  EE++FQ   SE +  V  H                       S  ++ ++S ++V INVSP+E+GHVL +P    CLPQ +  +  L  +     + +P FR+G+NSLG FA++NHLH
Sbjct:    8 LPNATVEEYNYFEEDFVFQGLSWKKRQEFAEDTSFLSPFDKALQSKWEEKMNEGLFRYPLRNVQTKILPGSVSYVAQLNIQRSINRRKPE-DIWSVQQKFNPNQFNYNKIKSEEIVFQMIRSEAEHSVDSHIVQGSMVNGMGSSECKSGSTPQGSCTLECKSSCTLVVINVSPLEFGHVLFMPDPSLCLPQILTENLMLFGMESVFLSSHPGFRVGFNSLGGFASVNHLH 236          
BLAST of FC930386 vs. ExPASy Swiss-Prot
Match: CO058_HUMAN (UPF0580 protein C15orf58 OS=Homo sapiens GN=C15orf58 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.378e-27
Identity = 66/173 (38.15%), Postives = 99/173 (57.23%), Query Frame = 3
Query:  207 PVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLH 725
            P +  D+ +   W+ RV+ GLFRY +   +T+++PG  GF+AQLN  R +++RP +  +  V Q FD  +FNF K+   EVLF+            P  P  +     +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH
Sbjct:   55 PQSPFDAALCSAWKQRVELGLFRYRLRELQTQILPGAVGFVAQLNVERGVQRRPPQ-TIKSVRQAFDPVQFNFNKIRPGEVLFRLHR--------EPDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARQLPQRLLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLH 218          
BLAST of FC930386 vs. ExPASy Swiss-Prot
Match: CO058_XENLA (UPF0580 protein C15orf58 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.235e-27
Identity = 70/211 (33.18%), Postives = 111/211 (52.61%), Query Frame = 3
Query:  171 GVHGHEVREPEPPVAFL---DSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEV----QFHPSAP-------------------IDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLH 725
            G+   E R+     +FL   D  +  +WE ++  GLFRY +   +T+++PG   ++AQLN  R + +R  E  +  + Q F+ N+FN+ K+  EE++FQ   SE        + H S+                    ++ +   ++V INVSP+E+GHVL +P    CLPQ +  D  L  L     + +P FR+G+NSLG FA++NHLH
Sbjct:   28 GLSWKERRQYAEDTSFLSPFDKALQSKWEQKMNEGLFRYPLRNLQTKILPGSLSYVAQLNIQRSINRRKPE-DIWSIQQKFNPNQFNYNKIKPEEIVFQMIRSETEHCVDSDKVHGSSVNGMGTSDCKSGSTHQRCCILECKGGCTLVVINVSPLEFGHVLFMPDPSLCLPQILTEDLMLFGLESVLLSAHPGFRVGFNSLGGFASVNHLH 237          
BLAST of FC930386 vs. ExPASy Swiss-Prot
Match: CO058_MACFA (UPF0580 protein C15orf58 homolog OS=Macaca fascicularis GN=QflA-20034 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.989e-26
Identity = 64/173 (36.99%), Postives = 98/173 (56.65%), Query Frame = 3
Query:  207 PVAFLDSLVLGEWEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLH 725
            P +  D+ +   W+ RV+ GLFRY +   +T+++PG  GF+AQLN  R +++R  +  +  V Q FD  +FNF K+   EVL++            P  P  +     +V INVSP+E+GHVLL+P     LPQR+   +    +     + +P FR+G+NSLG  A++NHLH
Sbjct:   55 PQSPFDAALCSAWKQRVELGLFRYRLRELQTQILPGVVGFVAQLNVERGVQRRRPQ-TIKSVRQAFDPEQFNFNKIQPGEVLYRLHR--------EPDLPGTLLQEDILVVINVSPLEWGHVLLVPEPARGLPQRLLPGALRAGIEAVLLSLHPGFRVGFNSLGGLASVNHLH 218          
BLAST of FC930386 vs. ExPASy Swiss-Prot
Match: CO058_DANRE (UPF0580 protein C15orf58 homolog OS=Danio rerio GN=zgc:153343 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.862e-24
Identity = 59/161 (36.65%), Postives = 90/161 (55.90%), Query Frame = 3
Query:  243 WEDRVQRGLFRYDVTACETRVIPGQYGFIAQLNEGRHLKKRPTEFRVDKVLQPFDGNKFNFTKVGQEEVLFQFEASEDGEVQFHPSAPIDVENSPSVVAINVSPIEYGHVLLIPRVLECLPQRIDRDSFLLALYMAAEAGNPYFRLGYNSLGAFATINHLH 725
            W ++   GLFRY +   ETR++PG  G+IAQLN  R  ++R  +  +  V Q FD  +FNF K+  +E+LF+ +   + +                 V INVSP+E+GH LL+P   +C PQ +   +    +     + +P FR+G+NSLG FA++NHLH
Sbjct:   39 WTEKRNTGLFRYRLDELETRILPGSRGYIAQLNIMRGTERRKPQ-EILSVRQNFDPKQFNFNKINPKELLFELKRESERKCS---------------VIINVSPLEFGHCLLVPEPEKCFPQVLTHLAVQTGIETVLLSADPGFRVGFNSLGGFASVNHLH 183          
The following BLAST results are available for this feature:
BLAST of FC930386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CO058_MOUSE6.184e-2838.73UPF0580 protein C15orf58 homolog OS=Mus musculus P... [more]
CO058_BOVIN1.055e-2737.36UPF0580 protein C15orf58 homolog OS=Bos taurus PE=... [more]
CO058_XENTR1.378e-2731.74UPF0580 protein C15orf58 homolog OS=Xenopus tropic... [more]
CO058_HUMAN1.378e-2738.15UPF0580 protein C15orf58 OS=Homo sapiens GN=C15orf... [more]
CO058_XENLA5.235e-2733.18UPF0580 protein C15orf58 homolog OS=Xenopus laevis... [more]
CO058_MACFA1.989e-2636.99UPF0580 protein C15orf58 homolog OS=Macaca fascicu... [more]
CO058_DANRE1.862e-2436.65UPF0580 protein C15orf58 homolog OS=Danio rerio GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34007A05EF PostHarvC1 Citrus clementina cDNA clone C34007A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930386 ID=FC930386; Name=FC930386; organism=Citrus clementina; type=EST; length=728bp
GGGTGCCGACGGTTGTTTCGAATTATCAGAAAGAGGAGACGGAGGAGGCT
GCTGCTGCTGCTCGTCGTGTAAGCGGGTGCGGGAGGAATTGCTTGAACAA
ATGTTGCATTCAAGGTGCAAAGCTTCCTTTATATGCTTTCAAGAGGGTGA
ACAAGTTTAAAACTGAAATGGGTGTGCATGGACACGAGGTTAGAGAGCCC
GAGCCTCCCGTTGCATTTCTGGACTCGCTCGTTCTTGGGGAGTGGGAGGA
CCGCGTACAGAGAGGACTATTTCGCTATGATGTTACTGCCTGTGAAACCA
GGGTCATTCCTGGTCAGTATGGTTTCATTGCTCAACTGAACGAGGGCCGC
CACCTGAAGAAAAGGCCTACTGAGTTCCGTGTTGATAAGGTCCTCCAGCC
TTTTGATGGGAACAAGTTCAACTTTACCAAAGTGGGGCAAGAAGAGGTGC
TCTTCCAGTTTGAGGCAAGCGAAGATGGTGAAGTCCAGTTTCACCCAAGT
GCCCCCATTGATGTTGAGAATTCTCCAAGTGTTGTTGCCATCAATGTGAG
TCCTATTGAGTACGGGCATGTGCTGTTGATCCCACGAGTTCTTGAGTGCT
TGCCACAGAGGATTGACCGTGATAGCTTCTTGCTCGCACTTTACATGGCT
GCAGAAGCTGGGAATCCATACTTCAGGTTGGGTTACAACAGCTTGGGTGC
ATTTGCTACCATCAACCACCTTCACTTC
back to top