FC930387

Overview
NameFC930387
Unique NameFC930387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14940 contig Ccv1_Contig14940:130..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF6_DICDI (Kinesin-related protein 6 OS=Dictyostelium discoideum GN=kif6 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.203e-48
Identity = 121/264 (45.83%), Postives = 158/264 (59.85%), Query Frame = 2
Query:    2 GTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSL--SKGNNPKKDILSSTI--------NLKE------------STTAPLSSALPTTSPYEDDTDAWPEQNERDDFDASEDSYEPEKPVW-------MKSGKLEQFNLPSAQDQLRKPPN-GQTRWKEQP 703
            G+TG N +SSRSHAILQ+++K        K  +L GK SFIDLAGSERG+DT DNDKQTR EGA+INKSLLALKECIRALD    H PFR S LT+VL+DSFVGNSRTVMI+ ISP+    EHTLNTLRYADRVK L  S+ N+ KK + +  I        +LK+            +TT   ++A+ +  P    T + P    +      ++S  P+ P          +  + +Q+N+P    Q ++  N  QT  ++QP
Sbjct:  645 GSTGVNSDSSRSHAILQISLKNI------KTNKLHGKFSFIDLAGSERGSDTYDNDKQTRKEGADINKSLLALKECIRALDQSSKHTPFRQSTLTQVLKDSFVGNSRTVMIANISPNQSSSEHTLNTLRYADRVKELGTSESNSNKKPVATYNIPAPLPPPDHLKQNFNDPILIPSTTTTTTTTATAINSQQPIIQQT-SQPVSKIKQPVKQQQESQIPQTPQQQQQQQPPQQQPQQQQYNIPQTPQQTQQQFNIPQTPKQQQP 901          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF24_MOUSE (Kinesin-like protein KIF24 OS=Mus musculus GN=Kif24 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.260e-44
Identity = 93/140 (66.43%), Postives = 109/140 (77.86%), Query Frame = 2
Query:    2 GTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKG 421
            G TG N +SSRSHAI+Q+ IK SA        R  G++SFIDLAGSER AD  D+D+QT+MEGAEIN+SLLALKECIRALD +  H PFR SKLT+VL+DSF+GN++T MI+ ISPS    EHTLNTLRYADRVK L KG
Sbjct:  412 GATGVNADSSRSHAIIQIQIKDSAK-------RTFGRISFIDLAGSERAADARDSDRQTKMEGAEINQSLLALKECIRALDQEHTHTPFRQSKLTQVLKDSFIGNAKTCMIANISPSHIATEHTLNTLRYADRVKELKKG 544          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF24_HUMAN (Kinesin-like protein KIF24 OS=Homo sapiens GN=KIF24 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.260e-44
Identity = 92/140 (65.71%), Postives = 109/140 (77.86%), Query Frame = 2
Query:    2 GTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKG 421
            G TG N +SSRSHA++Q+ IK SA        R  G++SFIDLAGSER AD  D+D+QT+MEGAEIN+SLLALKECIRALD +  H PFR SKLT+VL+DSF+GN++T MI+ ISPS    EHTLNTLRYADRVK L KG
Sbjct:  417 GATGVNADSSRSHAVIQIQIKDSAK-------RTFGRISFIDLAGSERAADARDSDRQTKMEGAEINQSLLALKECIRALDQEHTHTPFRQSKLTQVLKDSFIGNAKTCMIANISPSHVATEHTLNTLRYADRVKELKKG 549          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF2A_CHICK (Kinesin-like protein KIF2A OS=Gallus gallus GN=KIF2A PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.480e-42
Identity = 101/188 (53.72%), Postives = 123/188 (65.43%), Query Frame = 2
Query:    2 GTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVG-NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTINLKESTTAPLSSALPT-TSPYEDDTDAWPEQNERD 559
            G T AN  SSRSHA+ Q+ ++R          +L GK S IDLAG+ERGADT+  D+QTR+EGAEINKSLLALKECIRAL  ++ H PFR SKLT+VLRDSF+G NSRT MI+ ISP    CE+TLNTLRYA+RVK L+   +   DI    I+   S    L +     +SP  DD     EQNE +
Sbjct:  424 GQTSANAHSSRSHAVFQIILRRKG--------KLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKELTIDPSAAGDI-RPIIHHTPSQIDDLDTQWGVGSSPQRDDLKLLCEQNEEE 602          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF2A_RAT (Kinesin-like protein KIF2A OS=Rattus norvegicus GN=Kif2a PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.304e-41
Identity = 99/188 (52.66%), Postives = 122/188 (64.89%), Query Frame = 2
Query:    2 GTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVG-NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTINLKESTTAPLSSALPT-TSPYEDDTDAWPEQNERD 559
            G T AN  SSRSHA+ Q+ ++R          +L GK S IDLAG+ERGADT+  D+QTR+EGAEINKSLLALKECIRAL  ++ H PFR SKLT+VLRDSF+G NSRT MI+ ISP    CE+TLNTLRYA+RVK L+       D+    ++   S    L +     +SP  DD     EQNE +
Sbjct:  423 GQTSANAHSSRSHAVFQIILRRKG--------KLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKELTVDPTAAGDV-RPIMHHPPSQIDDLETQWGVGSSPQRDDLKLLCEQNEEE 601          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF2C_MOUSE (Kinesin-like protein KIF2C OS=Mus musculus GN=Kif2c PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.703e-41
Identity = 91/144 (63.19%), Postives = 105/144 (72.92%), Query Frame = 2
Query:    2 GTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVG-NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNP 430
            G T AN  SSRSHA  Q+ ++           RL GK S +DLAG+ERGADT+  D+QTRMEGAEINKSLLALKECIRAL  ++ H PFR SKLT+VLRDSF+G NSRT MI+ ISP    CE+TLNTLRYADRVK LS  + P
Sbjct:  455 GQTFANSNSSRSHACFQILLRTKG--------RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSPHSGP 590          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF2A_MOUSE (Kinesin-like protein KIF2A OS=Mus musculus GN=Kif2a PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.703e-41
Identity = 99/188 (52.66%), Postives = 122/188 (64.89%), Query Frame = 2
Query:    2 GTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVG-NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTINLKESTTAPLSSALPT-TSPYEDDTDAWPEQNERD 559
            G T AN  SSRSHA+ Q+ ++R          +L GK S IDLAG+ERGADT+  D+QTR+EGAEINKSLLALKECIRAL  ++ H PFR SKLT+VLRDSF+G NSRT MI+ ISP    CE+TLNTLRYA+RVK L+       D+    ++   S    L +     +SP  DD     EQNE +
Sbjct:  423 GQTSANAHSSRSHAVFQIILRRKG--------KLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKELTVNPAAAGDV-HPIMHHPPSQIDDLETQWGVGSSPQRDDLKLLCEQNEEE 601          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF2A_HUMAN (Kinesin-like protein KIF2A OS=Homo sapiens GN=KIF2A PE=1 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 1.703e-41
Identity = 97/187 (51.87%), Postives = 119/187 (63.64%), Query Frame = 2
Query:    2 GTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVG-NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDILSSTINLKESTTAPLSSALPTTSPYEDDTDAWPEQNERD 559
            G T AN  SSRSHA+ Q+ ++R          +L GK S IDLAG+ERGADT+  D+QTR+EGAEINKSLLALKECIRAL  ++ H PFR SKLT+VLRDSF+G NSRT MI+ ISP    CE+TLNTLRYA+RVK L+       D+     +         +     +SP  DD     EQNE +
Sbjct:  424 GQTSANAHSSRSHAVFQIILRRKG--------KLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKELTVDPTAAGDVRPIMHHPPNQIDDLETQWGVGSSPQRDDLKLLCEQNEEE 602          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF2C_MACFA (Kinesin-like protein KIF2C OS=Macaca fascicularis GN=KIF2C PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.224e-41
Identity = 91/149 (61.07%), Postives = 107/149 (71.81%), Query Frame = 2
Query:    2 GTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVG-NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDIL 445
            G T AN  SSRSHA  Q+ ++           R+ GK S +DLAG+ERGADT+  D+QTRMEGAEINKSLLALKECIRAL  ++ H PFR SKLT+VLRDSF+G NSRT MI+ ISP    CE+TLNTLRYADRVK LS  + P  + L
Sbjct:  405 GQTFANSNSSRSHACFQILLRAKG--------RMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPHSGPSGEQL 545          
BLAST of FC930387 vs. ExPASy Swiss-Prot
Match: KIF2C_HUMAN (Kinesin-like protein KIF2C OS=Homo sapiens GN=KIF2C PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.224e-41
Identity = 91/149 (61.07%), Postives = 107/149 (71.81%), Query Frame = 2
Query:    2 GTTGANEESSRSHAILQLAIKRSADGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRMEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVG-NSRTVMISCISPSSGCCEHTLNTLRYADRVKSLSKGNNPKKDIL 445
            G T AN  SSRSHA  Q+ ++           R+ GK S +DLAG+ERGADT+  D+QTRMEGAEINKSLLALKECIRAL  ++ H PFR SKLT+VLRDSF+G NSRT MI+ ISP    CE+TLNTLRYADRVK LS  + P  + L
Sbjct:  459 GQTFANSNSSRSHACFQIILRAKG--------RMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPHSGPSGEQL 599          
The following BLAST results are available for this feature:
BLAST of FC930387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
KIF6_DICDI3.203e-4845.83Kinesin-related protein 6 OS=Dictyostelium discoid... [more]
KIF24_MOUSE1.260e-4466.43Kinesin-like protein KIF24 OS=Mus musculus GN=Kif2... [more]
KIF24_HUMAN1.260e-4465.71Kinesin-like protein KIF24 OS=Homo sapiens GN=KIF2... [more]
KIF2A_CHICK4.480e-4253.72Kinesin-like protein KIF2A OS=Gallus gallus GN=KIF... [more]
KIF2A_RAT1.304e-4152.66Kinesin-like protein KIF2A OS=Rattus norvegicus GN... [more]
KIF2C_MOUSE1.703e-4163.19Kinesin-like protein KIF2C OS=Mus musculus GN=Kif2... [more]
KIF2A_MOUSE1.703e-4152.66Kinesin-like protein KIF2A OS=Mus musculus GN=Kif2... [more]
KIF2A_HUMAN1.703e-4151.87Kinesin-like protein KIF2A OS=Homo sapiens GN=KIF2... [more]
KIF2C_MACFA2.224e-4161.07Kinesin-like protein KIF2C OS=Macaca fascicularis ... [more]
KIF2C_HUMAN2.224e-4161.07Kinesin-like protein KIF2C OS=Homo sapiens GN=KIF2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34007A06EF PostHarvC1 Citrus clementina cDNA clone C34007A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930387 ID=FC930387; Name=FC930387; organism=Citrus clementina; type=EST; length=734bp
GGGTACAACTGGTGCTAATGAGGAATCCTCCCGTTCACATGCCATACTTC
AGCTTGCTATCAAGAGGTCAGCTGATGGTAGTGAATCAAAGCCTCCTCGA
CTTGTTGGCAAGCTCTCTTTTATAGATCTTGCTGGAAGTGAACGTGGTGC
TGATACTACAGACAACGATAAACAGACAAGAATGGAAGGAGCAGAGATAA
ATAAGAGCTTGCTTGCACTAAAGGAATGCATAAGAGCTCTTGACAATGAT
CAGGGTCACATTCCTTTCAGAGGCAGTAAATTAACTGAGGTTCTGAGGGA
TTCATTTGTTGGCAATTCACGCACGGTTATGATATCATGCATTTCACCAA
GCTCAGGGTGTTGTGAACACACTCTCAACACATTAAGATATGCCGACAGA
GTGAAGAGTCTTTCAAAAGGGAACAATCCTAAAAAGGACATACTGTCTTC
AACCATAAATTTGAAGGAGTCAACTACTGCACCCTTATCTTCAGCTCTAC
CAACAACATCCCCTTATGAGGATGACACTGATGCATGGCCTGAACAAAAT
GAAAGAGATGATTTTGACGCATCAGAGGATTCCTATGAACCAGAGAAGCC
GGTATGGATGAAAAGTGGGAAGCTAGAGCAATTCAATCTCCCTTCTGCAC
AGGATCAATTACGAAAACCACCCAATGGTCAGACAAGGTGGAAGGAGCAG
CCAAAATCTGGGTTTTAAGAATTTCAATTCAGAT
back to top