FC930388

Overview
NameFC930388
Unique NameFC930388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930388_ssr320 microsatellite FC930388_ssr320:320..334. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930388_ssr24 microsatellite FC930388_ssr24:24..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12486 contig Ccv1_Contig12486:219..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930388 vs. ExPASy Swiss-Prot
Match: RHA2A_ARATH (RING-H2 zinc finger protein RHA2a OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.059e-30
Identity = 79/182 (43.41%), Postives = 100/182 (54.95%), Query Frame = 1
Query:   76 MGLHGQXXXXXXXXXXXXXVALIANCFGNLRSLLFSLLHSVGMTRVDPVQNNPAGP----HVGSGLASLIVLAEQLNKNRAFSXXXXXXXXXXXXXDNCCCGQGVASSAAGSNCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVVSEERVWNTRRRVGGDLIQWFSL 609
            MGL GQ             ++L+A    +LRS L  L            ++NP  P     + SGLA++IVLA+QL+ NR FS                 CG G      GS+C+VCL  L++GE VRKL+CRHVFHK CL+GWLH  NF CPLCRS +VS++ V  T+R VG DLI  FSL
Sbjct:    1 MGLQGQLSDVSSDSIPLMLLSLLAVFINHLRSFLLRLTS----------KSNPNLPVDDVSIASGLANIIVLADQLSLNRLFSYR---------------CGDG---GGGGSDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQFNFTCPLCRSALVSDDCVSKTQRSVGRDLISCFSL 154          
BLAST of FC930388 vs. ExPASy Swiss-Prot
Match: RHA2B_ARATH (RING-H2 zinc finger protein RHA2b OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.177e-23
Identity = 65/156 (41.67%), Postives = 79/156 (50.64%), Query Frame = 1
Query:   76 MGLHGQXXXXXXXXXXXXXVALIANCFGNLRSLLFSLLHSVGMTRVDPVQNNPAGPHVGSGLASLIVLAEQLNKNRAFSXXXXXXXXXXXXXDNCCCGQGVASSAAGSNCMVCLCTLRDGELVRKLDCRHVFHKDCLDGWLHHLNFNCPLCRSPVV 543
            MGL GQ             +AL+A  F ++RSLL                  P+   V    ++L VLA+QLN NR FS                       S  A S+C+VCL  L+ GE VRKLDCRHVFHK CL+GWL HLNFNCPLCRSP++
Sbjct:    1 MGLQGQLSDVSSDSIPLMLLALLATFFRHVRSLLLF----------------PSSAPVVVVTSNLSVLADQLNLNRLFSYRY--------------------SDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120          
The following BLAST results are available for this feature:
BLAST of FC930388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RHA2A_ARATH3.059e-3043.41RING-H2 zinc finger protein RHA2a OS=Arabidopsis t... [more]
RHA2B_ARATH6.177e-2341.67RING-H2 zinc finger protein RHA2b OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC34007A07EF PostHarvC1 Citrus clementina cDNA clone C34007A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930388 ID=FC930388; Name=FC930388; organism=Citrus clementina; type=EST; length=740bp
GAACCCCAAACCCACACTCACCCACCAGACCAGACCAGACCCAGTACCCA
AATTATTGAAAGAAAAAAAGCCATCATGGGGCTCCACGGCCAGCTGATCG
ACTTGTCGTCCGATTCACTTCCACTCCTAATCGTCGCCCTCATCGCCAAC
TGCTTCGGCAACCTCCGCTCTCTACTCTTCAGCCTCCTCCACTCCGTGGG
CATGACCCGAGTCGACCCGGTTCAGAATAACCCGGCCGGCCCACACGTCG
GATCGGGTCTCGCTAGCCTCATAGTCCTCGCCGAGCAACTGAATAAAAAC
CGGGCCTTTTCTTATAAATACAACAACAACAACAATATTAATAAAATTAA
TGACAATTGTTGCTGCGGTCAGGGGGTGGCAAGTAGCGCTGCCGGTAGTA
ATTGCATGGTGTGCTTGTGCACGCTAAGAGATGGCGAGCTCGTCAGGAAG
CTTGATTGCCGCCACGTGTTTCACAAGGATTGCCTTGACGGCTGGCTTCA
TCATCTCAATTTTAACTGTCCGCTTTGCAGATCGCCGGTTGTTTCCGAAG
AGCGCGTCTGGAACACGCGGAGGCGAGTCGGCGGGGATTTGATTCAGTGG
TTCTCCCTGCGTTAATGTACATCAGAAGCATCTCCACGATTGCATATTGG
TTTTGATGGTTCAATGATGCATCCGCTACCCCCATGATTCTCTTTGATGG
TTGATGCTGGNTGGTGATTTCATTTTTAGCTATAATCTTT
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