FC930402

Overview
NameFC930402
Unique NameFC930402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig518 contig Ccv1_Contig518:120..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.899e-75
Identity = 137/171 (80.12%), Postives = 159/171 (92.98%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQTERQS 637
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEYANNSVR TI+RYKKAC+D+ NP +ITEANTQ+YQQEA+KLRRQIR+IQNLNRHILGE+L +LNFKELKNLE+RLEKGI RVRSKK+EML+AEIE+M+KREI+LQNDNMYLR++I+E    Q +  S
Sbjct:   28 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITERTGLQQQESS 198          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 9.424e-75
Identity = 134/175 (76.57%), Postives = 161/175 (92.00%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQTERQSESMM 649
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEYANNSVR TI+RYKKAC+D+ NP S+TEANTQ+YQQEA+KLRRQIR+IQN NRHI+GE+L +LNFKELKNLE RLEKGI RVRSKKNE+L+AEIE+M+KRE++LQ++NMYLRA+I+E  R   ++Q  S++
Sbjct:   28 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGARLNPDQQESSVI 202          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 4.840e-71
Identity = 129/174 (74.14%), Postives = 156/174 (89.66%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQTERQSESM 646
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV+ATI+RYKKAC+DSSN GSI+EAN Q+YQQEA+KLR QI  +QN NR++LGE+L+ L+ ++LKNLE ++EKGI ++RSKKNE+L AEIE+M+KREI L N+N YLRA+I+E ERAQ ++Q + M
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQQQQQQQM 202          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 5.351e-70
Identity = 126/175 (72.00%), Postives = 154/175 (88.00%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQTERQSESMM 649
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFS+RGRLYEYANNSV+ATI+RYKKAC+DSSN GS++EAN Q+YQQEA+KLR QI  + N NR+++GEAL+ +  KELKNLE R+EKGI ++RSKKNE+L AEIE+M+KRE+ L N+N YLRA+I+E ERAQ + Q  ++M
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVKATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQHQQMNLM 203          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.009e-68
Identity = 125/166 (75.30%), Postives = 149/166 (89.76%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQ 622
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV+ATI+RYKKAC+DSSN GSI EAN Q+YQQEA+KLR QI  +QN NR+ LGE+L+ LN ++L+NLE ++EKGI ++R+KKNE+L AEIE+M+KREI L N+N YLRA+I+E ER+Q
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERSQ 194          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 9.446e-67
Identity = 122/166 (73.49%), Postives = 146/166 (87.95%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQ 622
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEYANNSV+ TI+RYKKAC DS N  S++EAN QFYQQEA+KLR++I  IQ  NR+++GE+L +L  ++LK LE +LEKGI R+RSKKNE+L AEIE+M+K+EI L N+N YLRA+I+ENERAQ
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERAQ 194          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.277e-63
Identity = 114/167 (68.26%), Postives = 149/167 (89.22%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLN-RHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAQ 622
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV++T++RYKKA +D+SN G++ E N Q YQQE++KLR+QI  +QN N R I+G++++T++ ++LK +E RLEKGI ++R++KNE+L AE+E+M+KRE++LQNDNMYLR+++ ENER Q
Sbjct:   13 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENERGQ 179          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.277e-63
Identity = 115/164 (70.12%), Postives = 142/164 (86.59%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 616
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+NNSV+ TI+RYKKA +D+SN GS+ E N Q+YQQE+ KLR+QI  IQN NR ++GE + +++ KEL+NLE RL++ + R+RSKKNE+L AEI++M+KRE+ L NDN  LRA+I+ENER
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAKIAENER 192          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 1.667e-63
Identity = 116/164 (70.73%), Postives = 142/164 (86.59%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 616
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+NNSV+ TI+RYKKA +D+SN GS+ E N Q+YQQE+ KLR+QI  IQN NR ++GE + +++ KEL+NLE RLE+ I R+RSKKNE+L +EI++M+KRE+ L NDN  LRA+I+ENER
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENER 192          
BLAST of FC930402 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.005e-62
Identity = 109/164 (66.46%), Postives = 145/164 (88.41%), Query Frame = 2
Query:  125 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENER 616
            NTTNRQVTFCKRR+GLLKKAYELSVLCDAEVAL+VFSSRGRLYEY+NNSV+ TI+RYKKA +D+SN  ++ E N Q YQQEA KL++QI  +QN NR ++G+ ++T+N +ELK LE RL+KG+G++R++KNE+L AEIE+M++RE +LQNDNMYL+++++E+ER
Sbjct:   55 NTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESER 218          
The following BLAST results are available for this feature:
BLAST of FC930402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AGL5_ARATH1.899e-7580.12Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AGL1_ARATH9.424e-7576.57Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AG_TOBAC4.840e-7174.14Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_SOLLC5.351e-7072.00Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_PETHY1.009e-6875.30Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_PANGI9.446e-6773.49Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
MADS3_ORYSJ1.277e-6368.26MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AG_BRANA1.277e-6370.12Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_ARATH1.667e-6370.73Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
MAD58_ORYSJ7.005e-6266.46MADS-box transcription factor 58 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34007B10EF PostHarvC1 Citrus clementina cDNA clone C34007B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930402 ID=FC930402; Name=FC930402; organism=Citrus clementina; type=EST; length=649bp
GAAAGATTACATGTGTAGCTCAAGCAAGTTACCAGCAACCATGGAGTTTC
CAAAACAAAACCCAGAAAGCTCAAGCCAAAGCAAGAAAATAGGAAGAGGC
AAAATTGAGATAAAGCGGATCGAGAACACAACAAACAGACAAGTCACCTT
CTGTAAACGCCGCAATGGATTGTTGAAGAAAGCTTATGAACTGTCTGTCT
TGTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTGGCCGCCTT
TATGAATATGCTAACAACAGTGTCAGAGCAACAATTGACAGGTACAAGAA
AGCATGTGCCGATTCTTCTAACCCAGGATCTATTACTGAAGCTAACACTC
AGTTTTACCAGCAAGAAGCCACAAAACTACGAAGACAAATCCGGGAGATT
CAGAATTTGAACAGGCACATTCTGGGTGAGGCCCTCAGCACTTTAAACTT
TAAGGAGCTCAAGAACCTTGAGGCAAGACTTGAGAAGGGAATCGGCAGAG
TCAGATCCAAGAAGAACGAAATGTTATTAGCTGAAATCGAGTTCATGGAG
AAGAGGGAAATTCAGCTTCAAAATGATAACATGTACCTGAGAGCAAGGAT
ATCTGAAAATGAGAGAGCACAAACAGAACGGCAATCAGAAAGCATGATG
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