FC930403

Overview
NameFC930403
Unique NameFC930403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930403_ssr58 microsatellite FC930403_ssr58:58..69. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4798 contig Ccv1_Contig4798:78..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: SFC1_YEAST (Succinate/fumarate mitochondrial transporter OS=Saccharomyces cerevisiae GN=SFC1 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 70/191 (36.65%), Postives = 99/191 (51.83%), Query Frame = 3
Query:  147 KKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQL--DTTGTYK----GIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPEL----LKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFT 689
            KK   P +  ++G   G+ EA C  P+D IK R+Q+     G       G I  G T+ + EG  AL+KGL      +  K  +R  S   +++   + ++G +S     +AG GAG+ EA+ +V P EVVKIRLQ Q  L+P       KY   IH A  I++EEG+  L+ G + T  R  TNQ A FT
Sbjct:    5 KKASHPAINLMAGGTAGLFEALCCHPLDTIKVRMQIYRRVAGIEHVKPPGFIKTGRTIYQKEGFLALYKGLGAVVIGIIPKMAIRFSSYEFYRTLLVNKESGIVSTGNTFVAGVGAGITEAVLVVNPMEVVKIRLQAQH-LTPSEPNAGPKYNNAIHAAYTIVKEEGVSALYRGVSLTAARQATNQGANFT 194          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: TXTP_RAT (Tricarboxylate transport protein, mitochondrial OS=Rattus norvegicus GN=Slc25a1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 64/189 (33.86%), Postives = 98/189 (51.85%), Query Frame = 3
Query:  132 PSPVPKKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGT---YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIR-LQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            P     K   P    ++G L G +E C   P + +KT+LQLD       Y+GI  C     R+ GV  L++GL+        K  +R G      +  +D++ G++ ++  L+ G GAGV EA+ +V P E VK++ +  Q   +P   KY+G  H  R I+RE+GL G + G   TV++ G+NQA  F
Sbjct:   15 PGSGKAKLTHPGKAILAGGLAGGIEICITFPTEYVKTQLQLDERANPPRYRGIGDCVRQTVRSHGVLGLYRGLSSLLYGSIPKAAVRFGMFEFLSNHMRDAQ-GRLDSRRGLLCGLGAGVAEAVVVVCPMETVKVKFIHDQTSSNP---KYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRF 199          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: TXTP_HUMAN (Tricarboxylate transport protein, mitochondrial OS=Homo sapiens GN=SLC25A1 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 63/189 (33.33%), Postives = 98/189 (51.85%), Query Frame = 3
Query:  132 PSPVPKKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTG---TYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIR-LQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            P+    K   P    ++G L G +E C   P + +KT+LQLD       Y+GI  C     R+ GV  L++GL+        K  +R G      +  +D++ G++ +   L+ G GAGV EA+ +V P E +K++ +  Q   +P   KY+G  H  R I+RE+GL G + G   TV++ G+NQA  F
Sbjct:   15 PASGKAKLTHPGKAILAGGLAGGIEICITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVLGLYRGLSSLLYGSIPKAAVRFGMFEFLSNHMRDAQ-GRLDSTRGLLCGLGAGVAEAVVVVCPMETIKVKFIHDQTSPNP---KYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRF 199          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: TXTP_BOVIN (Tricarboxylate transport protein, mitochondrial OS=Bos taurus GN=SLC25A1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 62/190 (32.63%), Postives = 98/190 (51.58%), Query Frame = 3
Query:  129 NPSPVPKKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTG---TYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIR-LQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            +P     K   P    ++G L G +E C   P + +KT+LQLD       Y+GI  C     R+ G+  L++GL+        K  +R G+     +  +D++ G++ +   L+ G GAGV EA+ +V P E +K++ +  Q   SP   KY+G  H  R I+RE+GL G + G   TV++ G+NQ   F
Sbjct:   14 SPGSGKAKLTHPGKAILAGGLAGGIEICITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGLLGLYRGLSSLLYGSIPKAAVRFGTFEFLSNHMRDAQ-GRLDSTRGLLCGLGAGVPEAVVVVCPMETIKVKFIHDQTSASP---KYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQGIRF 199          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: TXTP_CAEEL (Putative tricarboxylate transport protein, mitochondrial OS=Caenorhabditis elegans GN=K11H3.3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20
Identity = 60/173 (34.68%), Postives = 90/173 (52.02%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLD---TTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            V G + G +E C   P + +KT+LQLD    T  ++G I C        G   L++GL+        K + R G+    +S   D + G +S   RL+ G GAG+ EA+  VTP E VK++    +GL+    KYKG +H    I++ EGL G++ G   T+ + G+NQA  F
Sbjct:   30 VIGGITGGIEICITFPTEYVKTQLQLDERSATPKFRGPIDCVKQTVNGHGFFGLYRGLSVLLYGSIPKSSFRFGTFEYLKSQAADER-GNLSPVMRLLCGLGAGLSEAVFAVTPMETVKVKFIHDQGLAQP--KYKGFVHGVGCIVKAEGLGGIYKGVTATMAKQGSNQAIRF 199          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: TXTP_YEAST (Tricarboxylate transport protein OS=Saccharomyces cerevisiae GN=CTP1 PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 60/195 (30.77%), Postives = 96/195 (49.23%), Query Frame = 3
Query:  135 SPVPKKTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQL--DTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRL-QQQRGLSPELLKY----KGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKN 698
            S   K  + P    ++GSL G  EAC   P +  KTRLQL    +   +  +      ++T+G+ +++ G   F    T K  +R       +   +DS+TG++S    ++AG GAG+LE++A VTPFE +K  L   ++  +P   KY    +G +     ++R++G  GL+ G  P  MR   NQA      N
Sbjct:    3 SKATKSDVDPLHSFLAGSLAGAAEACITYPFEFAKTRLQLIDKASKASRNPLVLIYKTAKTQGIGSIYVGCPAFIIGNTAKAGIRFLGFDTIKDMLRDSETGELSGTRGVIAGLGAGLLESVAAVTPFEAIKTALIDDKQSATP---KYHNNGRGVVRNYSSLVRDKGFSGLYRGVLPVSMRQAANQAVRLGCYN 194          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: ODC2_YEAST (Mitochondrial 2-oxodicarboxylate carrier 2 OS=Saccharomyces cerevisiae GN=ODC2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 56/183 (30.60%), Postives = 93/183 (50.82%), Query Frame = 3
Query:  150 KTIPPYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGT-----------YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDS-KTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            K +P   + +SG++ G+ E   + P+DV+KTR QL+ T             Y G+I C   + + EG   L++G++        K   +   N  +Q  FK+   T + + +  + AG  AG+ EA A++ PFE++KIR+Q  +        Y GP+ C +  I+ EG+ GL+ G   T+ RN
Sbjct:    8 KPLPFIYQFISGAVAGISELTVMYPLDVVKTRFQLEVTTPTAAAVGKQVERYNGVIDCLKKIVKKEGFSRLYRGISSPMLMEAPKRATKFACNDQYQKIFKNLFNTNETTQKISIAAGASAGMTEA-AVIVPFELIKIRMQDVKS------SYLGPMDCLKKTIKNEGIMGLYKGIESTMWRN 183          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: HDCPA_DANRE (Hepatocellular carcinoma down-regulated mitochondrial carrier homolog A OS=Danio rerio GN=hdmcpa PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 55/177 (31.07%), Postives = 90/177 (50.85%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQ----RGLSPELL---KYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            ++GS GG        P+D +K R+Q  T   + GI  C     R EGV   +KG+    T +++  ++  G+      A    +  + +     M+G   GV + +++++P ++VK+RLQ Q      ++P+     KY GPIHC   I RE+GL GL+ GA P  +R+G + A  F
Sbjct:    7 LAGSFGGACGVAVGYPLDTVKVRIQ--TQKQFTGIWQCIVLTIRKEGVHGFFKGMFLPITTISMTSSVVFGTYRNCLQALSYIRKAENTKLDVFMSGLAGGVAQ-VSVMSPGDIVKVRLQCQTESRHSVNPKYSVKPKYSGPIHCLLSICREQGLSGLYRGALPLALRDGPSFATYF 180          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: S2545_MOUSE (Solute carrier family 25 member 45 OS=Mus musculus GN=Slc25a45 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 57/176 (32.39%), Postives = 93/176 (52.84%), Query Frame = 3
Query:  162 PYMKAVSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMG--SN---AVFQSAFKDSKTGKISNQGRLMAGFGAGVLEALAIVTPFEVVKIRLQQQRG----LSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRN 662
            P  + V+G + G V      P D +K RLQ  T  TY+GI+ C     R E V   +KG++     + L  ++  G  SN   A+  ++ ++ +    S     +AG   G+L+A  +  PF+++K+RLQ Q      +S  + +Y+GP+HCA  I+REEG  GL+ G+   V+R+
Sbjct:    2 PVEEFVAGWISGAVGLVLGHPFDTVKVRLQ--TQSTYQGIVDCVVKTYRHESVLGFFKGMSFPIASVALVNSVLFGVYSNTLLALTATSHQERRAQPPSYTNIFIAGCTGGLLQAYCLA-PFDLIKVRLQNQTEPRMQISSSMPRYRGPVHCAASILREEGPQGLFRGSWALVLRD 174          

HSP 2 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 57/182 (31.32%), Postives = 84/182 (46.15%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLDTTGT---------YKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNAVFQSAFKDSKTGKISNQGR---LMAGFGAGVLEALAIVTPFEVVKIRLQQQRGLSPELLKYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMF 686
            ++G  GG+++A CL P D+IK RLQ  T            Y+G +HC A++ R EG + L++G    +  L L+ T  +G   V         T +  N      L+AG  AG+   +   TPF+V+K R+Q   GL     KY G + C     R+EG+   + G      R     AA F
Sbjct:  104 IAGCTGGLLQAYCLAPFDLIKVRLQNQTEPRMQISSSMPRYRGPVHCAASILREEGPQGLFRG----SWALVLRDTPTLGMYFVTYEGLCRQYTPEGQNPSSATVLVAGGFAGIASWIT-ATPFDVIKSRMQMD-GLKGR--KYGGMLDCMASSFRQEGIGVFFKGMTLNSARAFPVNAATF 277          
BLAST of FC930403 vs. ExPASy Swiss-Prot
Match: HDCPB_DANRE (Hepatocellular carcinoma down-regulated mitochondrial carrier homolog B OS=Danio rerio GN=hdmcpb PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 56/183 (30.60%), Postives = 95/183 (51.91%), Query Frame = 3
Query:  177 VSGSLGGVVEACCLQPIDVIKTRLQLDTTGTYKGIIHCGATVSRTEGVRALWKGLTPFATHLTLKYTLRMGSNA---VFQSAFKDSKTGKISNQGRL-MAGFGAGVLEALAIVTPFEVVKIRLQQQ----RGLSPELL-KYKGPIHCARMIIREEGLFGLWAGAAPTVMRNGTNQAAMFTAKN 698
            ++GS+GG        P+D +K RLQ  T   Y G   C     R EG++  ++G++   + +++  +L  G+      F    +    G+  ++  + +AGF  GV + L ++ P ++VK+RLQ Q    + +S E   KY+GP+ C   I R+EGL GL+ G+A   +R+G + A  F   N
Sbjct:    7 LAGSVGGAFGVAVGYPLDTVKVRLQTQTG--YSGFWQCVRKTCRNEGLQGFYRGMSMPISTVSISSSLVFGTYRNILQFLHQLQHRSAGEPHHKAHIFLAGFTGGVTQVL-VMAPADIVKVRLQCQTEPVQHISQESSSKYRGPVQCLLRIARDEGLLGLYKGSAALALRDGPSFATYFLTYN 186          
The following BLAST results are available for this feature:
BLAST of FC930403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
SFC1_YEAST1.782e-2436.65Succinate/fumarate mitochondrial transporter OS=Sa... [more]
TXTP_RAT2.845e-2233.86Tricarboxylate transport protein, mitochondrial OS... [more]
TXTP_HUMAN8.279e-2233.33Tricarboxylate transport protein, mitochondrial OS... [more]
TXTP_BOVIN1.412e-2132.63Tricarboxylate transport protein, mitochondrial OS... [more]
TXTP_CAEEL7.749e-2034.68Putative tricarboxylate transport protein, mitocho... [more]
TXTP_YEAST8.567e-1930.77Tricarboxylate transport protein OS=Saccharomyces ... [more]
ODC2_YEAST8.567e-1930.60Mitochondrial 2-oxodicarboxylate carrier 2 OS=Sacc... [more]
HDCPA_DANRE3.047e-1631.07Hepatocellular carcinoma down-regulated mitochondr... [more]
S2545_MOUSE5.198e-1632.39Solute carrier family 25 member 45 OS=Mus musculus... [more]
HDCPB_DANRE5.198e-1630.60Hepatocellular carcinoma down-regulated mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionC34007B11EF PostHarvC1 Citrus clementina cDNA clone C34007B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930403 ID=FC930403; Name=FC930403; organism=Citrus clementina; type=EST; length=707bp
ATAACAAACACTCAGGAGGGAAGCAAGAAGAAGAGAAGCAATTCCCAGAA
GCACTTCTCTTCTTCTTCTCCAACTTCCCACTGTAAGCTTTTGGACACTT
GTTTTCTATGGATAATAAGCGAGAGCAAAACCCGAGCCCGGTTCCGAAGA
AGACGATCCCACCGTACATGAAAGCGGTGTCGGGTTCTCTCGGAGGGGTC
GTGGAGGCTTGTTGCTTGCAGCCAATCGACGTCATCAAGACGAGGTTACA
GCTGGACACAACTGGGACTTACAAGGGAATTATCCACTGCGGCGCCACCG
TTTCGCGTACCGAAGGCGTGCGGGCTCTGTGGAAAGGATTGACGCCGTTT
GCCACCCACTTGACCTTAAAGTACACGCTTCGAATGGGATCGAATGCCGT
GTTTCAATCGGCGTTTAAGGATTCTAAAACGGGGAAGATTAGCAATCAGG
GTCGGCTAATGGCTGGCTTTGGTGCTGGTGTGCTTGAAGCTCTCGCTATT
GTTACTCCTTTTGAGGTGGTGAAAATTAGACTACAACAGCAGAGAGGTTT
GAGTCCTGAGCTTCTAAAGTACAAGGGTCCTATACACTGTGCTCGTATGA
TCATCCGTGAGGAAGGACTCTTTGGACTCTGGGCAGGGGCTGCCCCAACT
GTTATGCGCAATGGGACAAACCAAGCTGCCATGTTTACGGCTAAAAATGC
TTTTGAT
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