FC930408

Overview
NameFC930408
Unique NameFC930408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3552 contig Ccv1_Contig3552:189..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: GDC_BOVIN (Graves disease carrier protein OS=Bos taurus GN=SLC25A16 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.989e-37
Identity = 88/222 (39.64%), Postives = 125/222 (56.31%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTY-KESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR----------HVPEDHKKDIMV-----KLACGSIAGLLGQTFTYPLDV 695
            PL+RVK+L+Q     +  +GVF +++ + K EG +G Y+GNGA + RI PY A+ +MA+E Y+  +I +   VS G V  L+AGS AG TAV+ TYPLD+VR +LA+Q            V  EH Y GI   F+  Y KE G  G YRG  P++ G+ PYAG+ F+ +  +K             P     +++V      L CG +AG + QT +YP DV
Sbjct:   54 PLDRVKVLLQAHNHHYRHLGVFSTLRAVPKKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKT-LITTKLGVS-GHVHRLMAGSMAGMTAVICTYPLDMVRVRLAFQ------------VKGEHTYTGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSYAPTLLGRPSSDNPNVLVLKTHINLLCGGVAGAIAQTISYPFDV 261          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: GDC_HUMAN (Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 8.887e-37
Identity = 87/222 (39.19%), Postives = 124/222 (55.86%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTY-KESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMK----RHVP-------EDHKKDIMVK----LACGSIAGLLGQTFTYPLDV 695
            PL+RVK+L+Q     +  +GVF +++ + + EG +G Y+GNGA + RI PY A+ +MA+E Y+  I         G V  L+AGS AG TAV+ TYPLD+VR +LA+Q            V  EH Y GI   F+  Y KE G  G YRG  P++ G+ PYAG+ F+ +  +K     H P        D+   +++K    L CG +AG + QT +YP DV
Sbjct:   56 PLDRVKVLLQAHNHHYKHLGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLG--ISGHVHRLMAGSMAGMTAVICTYPLDMVRVRLAFQ------------VKGEHSYTGIIHAFKTIYAKEGGFFGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSHAPTLLGRPSSDNPNVLVLKTHVNLLCGGVAGAIAQTISYPFDV 263          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: GDC_MOUSE (Graves disease carrier protein homolog OS=Mus musculus GN=Slc25a16 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.377e-36
Identity = 86/222 (38.74%), Postives = 123/222 (55.41%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTY-KESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR----------HVPEDHKKDIMV-----KLACGSIAGLLGQTFTYPLDV 695
            PL+RVK+L+Q     +  +GV  +++ + + EG +G Y+GNGA + RI PY A+ +MA+E Y+ +I      VS G V  L+AGS AG TAV+ TYPLD+VR +LA+Q            V  EH Y GI   F+  Y KE G  G YRG  P++ G+ PYAG+ F+ +  +K             P     +++V      L CG +AG + QT +YP DV
Sbjct:   56 PLDRVKVLLQAHNRHYKHLGVLSTLRAVPQKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTFITTKL-GVS-GHVHRLMAGSMAGMTAVICTYPLDVVRVRLAFQ------------VKGEHTYSGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSYAPALLGRPSSDNPNVLVLKTHINLLCGGVAGAIAQTISYPFDV 263          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: GDC_RAT (Graves disease carrier protein (Fragment) OS=Rattus norvegicus GN=Slc25a16 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.017e-32
Identity = 84/225 (37.33%), Postives = 120/225 (53.33%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGG---TAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTY-KESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR----------HVPEDHKKDIMV-----KLACGSIAGLLGQTFTYPLDV 695
            PL+RVK+L+Q     +  +GV   ++ + + EG +G Y+GNGA + RI PY A+ +MA+E Y+ +I      VS G V  L+AGS AG    TAV+ TYPLD+VR +LA+Q            V  EH Y GI   F+  Y KE G  G YRG  P++ G+ PYA + F+ +  +K             P     +++V      L CG +A  + QT +YP DV
Sbjct:   56 PLDRVKVLLQAHNHHYKHLGVLSPLRAVPQKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTFITTKL-GVS-GHVHRLMAGSMAGKMSMTAVICTYPLDVVRVRLAFQ------------VKGEHTYSGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYASVSFFTFGTLKSVGLSYAPTLLGRPSSDNPNVLVLKTHINLLCGGVARAIAQTISYPFDV 266          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: MCFB_DICDI (Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32
Identity = 73/215 (33.95%), Postives = 119/215 (55.35%), Query Frame = 3
Query:   78 PLERVKILVQT-------RRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR-HVPEDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            PLER+KIL Q           ++   G+  S+K +  TEG +GF++GNG +V RI PY+A+ +++YE+Y+ +++ +          +L  G  AG T++L TYPLDL+R++L  Q+  +              Y GI D  +   +E G+ GLY+G   S  G+ PY  + F  YE +K+  +P+D    ++  L  G+I+G   QT TYP+D++
Sbjct:  158 PLERLKILNQVGHMNLEQNAPKYKGRGIIQSLKTMYTTEGFIGFFKGNGTNVIRIAPYSAIQFLSYEKYKNFLLNNNDQTHLTTYENLFVGGAAGVTSLLCTYPLDLIRSRLTVQVFGNK-------------YNGIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLKKTFIPKDTTPTVVQSLTFGAISGATAQTLTYPIDLI 359          

HSP 2 Score: 92.4337 bits (228), Expect = 2.431e-18
Identity = 56/180 (31.11%), Postives = 88/180 (48.89%), Query Frame = 3
Query:   81 LERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKK 620
            L R ++ VQ    +++  G+  + K I + EG  G Y+G  AS   + PY A+++  YE  ++  I    D +   V  L  G+ +G TA   TYP+DL+R +L            QG+   + +Y G  D FR+  ++ G+ GLY G  P    + P   + F  YE MK+ +  D KK
Sbjct:  264 LIRSRLTVQVFGNKYN--GIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLKKTFIPK--DTTPTVVQSLTFGAISGATAQTLTYPIDLIRRRL----------QVQGIGGKDILYNGTFDAFRKIIRDEGVLGLYNGMIPCYLKVIPAISISFCVYEVMKKILKIDSKK 429          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2542_XENLA (Solute carrier family 25 member 42 OS=Xenopus laevis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.504e-31
Identity = 75/212 (35.38%), Postives = 117/212 (55.19%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWI--ILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKD---IMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+R KI+ Q     F     +  I +    +G +  +RGN A++ R++PYAA+ + A+E+Y++ +     F   +  P+  L+AG+ AG TA L TYPLDLVR ++A              V+ + +Y  I   F +  +E GL+ LYRG  P++ G+ PYAG+ F+ YE +K+   E   +       +L  G+ AGL GQ+ +YPLDVV
Sbjct:   56 PLDRTKIIFQVSSNRFSAKEAYRLIYRTYMNDGFLSLWRGNSATMVRVIPYAAIQFCAHEQYKKLLGSYYGFQGSALTPIPRLLAGALAGTTATLLTYPLDLVRARMA--------------VTQKEMYSNIIHVFMRMSREEGLKSLYRGFTPTVLGVIPYAGISFFTYETLKKLHAEHSGRTQPYTFERLLFGACAGLFGQSSSYPLDVV 253          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: MCFP_DICDI (Mitochondrial substrate carrier family protein P OS=Dictyostelium discoideum GN=mcfP PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 80/212 (37.74%), Postives = 114/212 (53.77%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVP-----EDHKKDIMVKLACGSIAGLLGQTFTYPLDVV 698
            PLERVKIL Q +   +    V+GS+ KI + EG  G +RGN A++ R+ PYAA+ +++YE  +  ++              +AGS AGG AV  TYPLDL+R +LA +I     K         H+        + T+ + G++G+YRG  P+L GI PY G+ F  +E +KR  P     E+ +     KL  G IAG + QT  YP DVV
Sbjct:   34 PLERVKILYQIKSELYSLNSVYGSMLKIVENEGIKGLWRGNSATILRVFPYAAVQFLSYETIKNHLVAD----KSSSFQIFLAGSAAGGIAVCATYPLDLLRARLAIEIHKKPTK-------PHHL-------LKSTFTKDGVKGIYRGIQPTLIGILPYGGISFSTFEFLKRIAPLNEIDENGQISGTYKLIAGGIAGGVAQTVAYPFDVV 227          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2542_XENTR (Solute carrier family 25 member 42 OS=Xenopus tropicalis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.272e-31
Identity = 75/212 (35.38%), Postives = 117/212 (55.19%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWI--ILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKD---IMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+R KI+ Q     F     +  I +    EG +  +RGN A++ R++PYAA+ + A+E+Y++ +     F   +  P+  L+AG+ AG TA + TYPLDLVR ++A              V+ + +Y  I   F +  +E GL+ LYRG  P++ G+ PYAG+ F+ YE +K+   E   +       +L  G+ AGL GQ+ +YPLDVV
Sbjct:   56 PLDRTKIIFQVSSNRFSAKEAYRLIYRTYLNEGFLSLWRGNSATMVRVIPYAAIQFCAHEQYKKLLGSYYGFQGSALTPIPRLLAGALAGTTATIITYPLDLVRARMA--------------VTPKEMYSNIIHVFMRMSREEGLKSLYRGFTPTVLGVIPYAGISFFTYETLKKLHAEHSGRTQPYPFERLLFGACAGLFGQSASYPLDVV 253          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: S2542_DANRE (Solute carrier family 25 member 42 OS=Danio rerio GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.272e-31
Identity = 77/212 (36.32%), Postives = 118/212 (55.66%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWI--ILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR-HVPEDHKKDIM--VKLACGSIAGLLGQTFTYPLDVV 698
            PL+R KI+ Q     F     +  I +    +G    +RGN A++ R++PYAA+ + A+E+Y+  +     F   +  PV  L+AGS AG TA + TYPLD+VR ++A              V+ + +Y  I D F +  +E GL+ LYRG  P++ G+ PYAGL F+ YE +K+ H  +  +       +L  G+ AGL+GQ+ +YPLDVV
Sbjct:   55 PLDRTKIIFQVSSNRFSAKEAYRLIYRTYLKDGFFSLWRGNSATMVRVIPYAAIQFCAHEQYKGILGKYYGFQGKALPPVPRLLAGSLAGTTAAIITYPLDMVRARMA--------------VTPKEMYSNIMDVFVRISREEGLKTLYRGFTPTILGVVPYAGLSFFTYETLKKTHAEKTGRAHPFPYERLVFGACAGLIGQSASYPLDVV 252          
BLAST of FC930408 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.616e-30
Identity = 72/212 (33.96%), Postives = 116/212 (54.72%), Query Frame = 3
Query:   78 PLERVKILVQTRRAEFHRIGVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFPDVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIVDSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKRHVPEDHKKD-----IMVKLACGSIAGLLGQTFTYPLDVV 698
            PL+R+KI++Q   ++  ++ +FG  +++ K  G    +RGNG +V +I P  A+ + AYE+Y++  +L+      G     I+GS AG TA  F YP+++++T+LA              V     Y GI DC ++  K  GL   Y+G  P+L GI PYAG+    YE +K +  ++  KD     +MV L CG+++   GQ  +YPL +V
Sbjct:  214 PLDRLKIMMQVHGSKSDKMNIFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKK--LLTEEGQKIGTFERFISGSMAGATAQTFIYPMEVMKTRLA--------------VGKTGQYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALV 409          

HSP 2 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 48/158 (30.38%), Postives = 78/158 (49.37%), Query Frame = 3
Query:  135 GVFGSIKKIAKTEGAMGFYRGNGASVARIVPYAALHYMAYEEYRRWIILSFP--DVSRGPVLDLIAGSFAGGTAVLFTYPLDLVRTKLAYQIV--DSSKKNFQGVVSAEHVYRGIRDCFRQTYKESGLRGLYRGAAPSLYGIFPYAGLKFYFYEEMKR 596
            G++   KKI K EG   FY+G   ++  I+PYA +    YE  + + + +F    V+ G ++ L  G+ +     L +YPL LVRT++  Q +   S + N  G+             FR+   + G+ GLYRG  P+   + P  G+ +  YE MK+
Sbjct:  326 GIYDCAKKILKHEGLGAFYKGYVPNLLGIIPYAGIDLAVYELLKSYWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALVRTRMQAQAMLEGSPQLNMVGL-------------FRRIISKEGIPGLYRGITPNFMKVLPAVGISYVVYENMKQ 470          
The following BLAST results are available for this feature:
BLAST of FC930408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
GDC_BOVIN3.989e-3739.64Graves disease carrier protein OS=Bos taurus GN=SL... [more]
GDC_HUMAN8.887e-3739.19Graves disease carrier protein OS=Homo sapiens GN=... [more]
GDC_MOUSE3.377e-3638.74Graves disease carrier protein homolog OS=Mus musc... [more]
GDC_RAT1.017e-3237.33Graves disease carrier protein (Fragment) OS=Rattu... [more]
MCFB_DICDI3.864e-3233.95Mitochondrial substrate carrier family protein B O... [more]
S2542_XENLA2.504e-3135.38Solute carrier family 25 member 42 OS=Xenopus laev... [more]
MCFP_DICDI3.271e-3137.74Mitochondrial substrate carrier family protein P O... [more]
S2542_XENTR4.272e-3135.38Solute carrier family 25 member 42 OS=Xenopus trop... [more]
S2542_DANRE4.272e-3136.32Solute carrier family 25 member 42 OS=Danio rerio ... [more]
SCMC1_HUMAN3.616e-3033.96Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionC34007C04EF PostHarvC1 Citrus clementina cDNA clone C34007C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930408 ID=FC930408; Name=FC930408; organism=Citrus clementina; type=EST; length=698bp
CCGGGGGGCATGCCTGTGTGTGCAAGGAGCTGGTGGGCGGTGGGGTGGCT
GGTGGCTTCGGCAAGACTGCTGTTGGCCCACTTGAGCGCGTCAAGATTTT
GGTTCAGACTAGAAGAGCAGAATTTCACAGGATCGGAGTGTTTGGATCCA
TTAAGAAGATCGCAAAAACAGAAGGTGCTATGGGTTTCTACAGAGGAAAT
GGTGCTAGTGTAGCTCGAATTGTTCCATATGCAGCACTTCATTACATGGC
TTATGAGGAATATCGTAGATGGATTATCCTCAGTTTTCCTGATGTTAGCA
GAGGCCCTGTACTTGATCTCATAGCAGGATCTTTTGCTGGAGGAACTGCT
GTGCTGTTTACTTATCCTCTTGATTTAGTTCGAACAAAATTGGCTTATCA
GATTGTTGATTCATCAAAAAAGAACTTTCAAGGAGTAGTTAGTGCAGAAC
ATGTTTATAGAGGAATTCGCGATTGTTTTCGTCAGACTTACAAAGAGTCT
GGGCTTAGAGGTCTATATCGTGGTGCAGCTCCATCGCTCTATGGAATCTT
CCCATATGCTGGTTTGAAATTTTACTTCTACGAGGAGATGAAGCGCCATG
TCCCTGAGGATCACAAGAAAGATATAATGGTGAAACTTGCATGTGGATCC
ATCGCAGGTCTATTGGGTCAGACCTTCACGTACCCTCTTGATGTTGTT
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