FC930422

Overview
NameFC930422
Unique NameFC930422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10209 contig Ccv1_Contig10209:28..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930422 vs. ExPASy Swiss-Prot
Match: YKT61_ARATH (VAMP-like protein YKT61 OS=Arabidopsis thaliana GN=YKT61 PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 6.526e-93
Identity = 165/193 (85.49%), Postives = 179/193 (92.75%), Query Frame = 1
Query:  109 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFXQQAKKLN 687
            MKITALLVLKC P+ SDPV+L+ A DVSHFGYFQRSSVKEF++FV RTV  RTPP QRQSVQHEEYKVH+YNRNGLCA+GFMDDHYPVRS+FSLLNQVLDEYQK+FGESWR+A+ D+ QPWPYL EALNK+QDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLS ASQMF +QAKK N
Sbjct:    1 MKITALLVLKCAPEASDPVILSNASDVSHFGYFQRSSVKEFVVFVGRTVASRTPPSQRQSVQHEEYKVHAYNRNGLCAVGFMDDHYPVRSAFSLLNQVLDEYQKSFGESWRSAKEDSNQPWPYLTEALNKFQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSMASQMFYKQAKKTN 193          
BLAST of FC930422 vs. ExPASy Swiss-Prot
Match: YKT62_ARATH (VAMP-like protein YKT62 OS=Arabidopsis thaliana GN=YKT62 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.477e-78
Identity = 144/195 (73.85%), Postives = 170/195 (87.18%), Query Frame = 1
Query:  109 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQ--RSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFXQQAKKLN 687
            MKITALLVLKC+P+  +PV+LA   D+S FG F   RS+ +EFI+F+ARTV +RTPPGQRQSV+HEEYKVH+YN NGLCA+GFMDDHYPVRS+FSLLNQVLD YQK++G++WR    ++ QPWPYL EA +K++DPAEADKLLKIQRELDETKIILHKTID VLARGEKLDSLVEKSS+LS AS+MF +QAKK N
Sbjct:    1 MKITALLVLKCDPETREPVILANVSDLSQFGKFSFYRSNFEEFIVFIARTVARRTPPGQRQSVKHEEYKVHAYNINGLCAVGFMDDHYPVRSAFSLLNQVLDVYQKDYGDTWRF--ENSSQPWPYLKEASDKFRDPAEADKLLKIQRELDETKIILHKTIDGVLARGEKLDSLVEKSSELSLASKMFYKQAKKTN 193          
BLAST of FC930422 vs. ExPASy Swiss-Prot
Match: YKT6_SCHPO (Synaptobrevin homolog ykt6 OS=Schizosaccharomyces pombe GN=ykt6 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.780e-43
Identity = 94/196 (47.96%), Postives = 135/196 (68.88%), Query Frame = 1
Query:  109 MKITALLVLKCNPDGSDPV-VLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFXQQAKKLN 687
            MK+ ++ +L+ +P    PV +L TA D+S F +FQRSS+ EF+ F  +TV +RT PGQRQ V+   Y  H YNR+ GLC +   D  YP+R +++LLN++LDE+  KN    W +        +P L+  L+KYQDP +AD ++++Q+ELDETK +LHKTI+SVLARGEKLD L+++S +LS  S+MF + AKK N
Sbjct:    1 MKLYSVSILRFDPK---PVQLLCTASDLSSFSFFQRSSIGEFMNFFTKTVAERTNPGQRQDVEQSNYVFHVYNRSDGLCGVIASDKEYPLRVAYTLLNKILDEFLTKNPRTKWESGAVT--LSFPELDTYLSKYQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLIQRSDNLSTQSRMFYKSAKKQN 191          
BLAST of FC930422 vs. ExPASy Swiss-Prot
Match: YKT6_ASHGO (Synaptobrevin homolog YKT6 OS=Ashbya gossypii GN=YKT6 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.194e-43
Identity = 95/196 (48.47%), Postives = 134/196 (68.37%), Query Frame = 1
Query:  109 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRT-AQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFXQQAKKLN 687
            MKI ++ +L+ +  G+  + L +A D+S FG+F+R+ V +F+ F   TV  RT  GQRQS++   Y  H Y+R+ GLC +   D  YPVR +++LLN+VLDEY      + WR  AQ  +      L   L KYQDP++AD ++++Q+ELDETKI+LHKTI+SVL RGEKLD+LV+KS  LSA+S+MF +QAKK N
Sbjct:    1 MKIYSIAILRNS--GNKALELCSAKDLSQFGFFERNGVSQFMTFFGETVAGRTGAGQRQSIEEGNYVGHVYSRSEGLCGVLITDKEYPVRPAYTLLNKVLDEYLVAHPPAEWRDIAQTSDQLKLRELEMYLAKYQDPSQADSIMRVQQELDETKIVLHKTIESVLQRGEKLDNLVDKSESLSASSRMFYKQAKKTN 194          
BLAST of FC930422 vs. ExPASy Swiss-Prot
Match: YKT6_CANGA (Synaptobrevin homolog YKT6 OS=Candida glabrata GN=YKT6 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.526e-41
Identity = 89/176 (50.57%), Postives = 124/176 (70.45%), Query Frame = 1
Query:  169 LATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQ-KNFGESWRTAQADNMQ-PWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFXQQAKKLN 687
            L    D+S FG+F+R+SV +F+ F A TV  RT  GQRQSV+   Y  H Y R+ G+C +   D  YPVR +++LLN+VLDEY   +  + W++  A N       L+  ++KYQDPA+AD ++K+Q+ELDETKI+LHKTI++VL RGEKLD+LV+KS  L+A+S+MF +QAKK N
Sbjct:   24 LTEVKDLSQFGFFERNSVGQFMTFFAETVATRTTAGQRQSVEEGNYIGHVYARSEGICGVLITDKDYPVRPAYTLLNKVLDEYLVAHPADQWKSITATNDSLKMAELSTYISKYQDPAQADAIMKVQQELDETKIVLHKTIENVLQRGEKLDNLVDKSESLTASSKMFYKQAKKTN 199          
BLAST of FC930422 vs. ExPASy Swiss-Prot
Match: YKT6_YEAST (Synaptobrevin homolog YKT6 OS=Saccharomyces cerevisiae GN=YKT6 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.399e-41
Identity = 87/182 (47.80%), Postives = 126/182 (69.23%), Query Frame = 1
Query:  151 GSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQ-KNFGESWR-TAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFXQQAKKLN 687
            G   + L+   D+S FG+F+RSSV +F+ F A TV  RT  GQRQS++   Y  H Y R+ G+C +   D  YPVR +++LLN++LDEY   +  E W    + ++      L+  ++KYQDP++AD ++K+Q+ELDETKI+LHKTI++VL RGEKLD+LV+KS  L+A+S+MF +QAKK N
Sbjct:   13 GEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKMKQLDTYISKYQDPSQADAIMKVQQELDETKIVLHKTIENVLQRGEKLDNLVDKSESLTASSKMFYKQAKKSN 194          
BLAST of FC930422 vs. ExPASy Swiss-Prot
Match: YKT6_YARLI (Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica GN=YKT6 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.439e-41
Identity = 92/196 (46.94%), Postives = 137/196 (69.90%), Query Frame = 1
Query:  109 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWRTA-QADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFXQQAKKLN 687
            MK+  + +L+  P+  + V LA+A D+S + +F+RS+V +   F+A TV  RT PGQRQSV+  +Y  H+Y R+ GL  +   D  YPVR +++LLN+VL+EY  K+    W  A +A +    P L + + +YQDP +AD ++++Q+ELDETKI+LHKTI+SVLARGE+LD+LV+KS  LS +S++F +QAKK N
Sbjct:    1 MKLYYIGILR--PNKPEAVQLASASDLSSYSWFERSTVGQAFTFLAETVIPRTEPGQRQSVEENDYVGHAYLRSDGLGGVIITDQEYPVRVAYTLLNKVLEEYLTKHPKAEWENAKEASSKLAMPELEDYVKRYQDPHQADAIMRVQQELDETKIVLHKTIESVLARGERLDTLVDKSEALSQSSKIFFKQAKKTN 194          
BLAST of FC930422 vs. ExPASy Swiss-Prot
Match: YKT6_DEBHA (Synaptobrevin homolog YKT6 OS=Debaryomyces hansenii GN=YKT6 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.572e-41
Identity = 89/196 (45.41%), Postives = 130/196 (66.33%), Query Frame = 1
Query:  109 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGES-WRTAQADNMQ-PWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFXQQAKKLN 687
            MKI  + +L+    G   + L +A D+S F +F+R+ V +F+ F + TV +RT  GQRQS++   Y  H+Y R+ GL  +   D  YPVR +++L+N++L+EY     +  W    A N    +  L   + KYQDP++AD ++K+Q+ELDETKI+LHKTI+SVL RGEKLDSLV+KS  LS++S+MF +QAKK N
Sbjct:    1 MKIYYIGILRIG--GEKALELTSARDLSQFSFFERNGVSQFMTFFSETVSQRTQAGQRQSIEEGNYIGHTYTRSEGLACVIITDKEYPVRPAYTLINKILEEYLSLHPQKDWANISATNASFNYDNLEHYIKKYQDPSQADSIMKVQQELDETKIVLHKTIESVLQRGEKLDSLVDKSEALSSSSRMFYKQAKKTN 194          
BLAST of FC930422 vs. ExPASy Swiss-Prot
Match: YKT6_KLULA (Synaptobrevin homolog YKT6 OS=Kluyveromyces lactis GN=YKT6 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.291e-40
Identity = 93/196 (47.45%), Postives = 133/196 (67.86%), Query Frame = 1
Query:  109 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNR-NGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWR-TAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFXQQAKKLN 687
            MKI  + VL+ + D +  + L++  D+S FG+F+R+SV +F+ F + TV  RT  GQRQSV+   Y  H Y R  G+C +   D  YPVR +++LLN+VLDEY        W+   ++D+      L+  + KYQDP++AD ++++Q+ELDETKI LHKTI++VL RGEKLD+LV+KS  LSAAS+MF +QAKK N
Sbjct:    1 MKIYYIGVLRNSDDKT--LELSSVKDLSQFGFFERNSVAQFMSFFSETVAGRTSAGQRQSVEEGNYVGHVYARPEGICGVLITDKEYPVRPAYTLLNKVLDEYLVAHPPIQWKDVTESDDSLKLKELDIYIAKYQDPSQADAIMRVQQELDETKITLHKTIENVLQRGEKLDNLVDKSESLSAASRMFYKQAKKTN 194          
BLAST of FC930422 vs. ExPASy Swiss-Prot
Match: YKT6_BOVIN (Synaptobrevin homolog YKT6 OS=Bos taurus GN=YKT6 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.299e-36
Identity = 88/195 (45.13%), Postives = 121/195 (62.05%), Query Frame = 1
Query:  109 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDETKIILHKTIDSVLARGEKLDSLVEKSSDLSAASQMFXQQAKKLN 687
            MK+ +L VL      S  V+L  A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ +EY  H Y RN  L  +   D  YP R +F+LL +VLDE+ K      W T   D ++ +  L+  L++YQ+P EAD + K+Q ELDETKIILH T++S+L RGEKLD LV KS  L   S+ F + A+K N
Sbjct:    1 MKLYSLSVLYKGE--SKTVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRNDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPTGSPDTIR-YSGLDSQLSRYQNPREADPMTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGIQSKAFYKTARKQN 192          
The following BLAST results are available for this feature:
BLAST of FC930422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
YKT61_ARATH6.526e-9385.49VAMP-like protein YKT61 OS=Arabidopsis thaliana GN... [more]
YKT62_ARATH3.477e-7873.85VAMP-like protein YKT62 OS=Arabidopsis thaliana GN... [more]
YKT6_SCHPO2.780e-4347.96Synaptobrevin homolog ykt6 OS=Schizosaccharomyces ... [more]
YKT6_ASHGO6.194e-4348.47Synaptobrevin homolog YKT6 OS=Ashbya gossypii GN=Y... [more]
YKT6_CANGA1.526e-4150.57Synaptobrevin homolog YKT6 OS=Candida glabrata GN=... [more]
YKT6_YEAST3.399e-4147.80Synaptobrevin homolog YKT6 OS=Saccharomyces cerevi... [more]
YKT6_YARLI4.439e-4146.94Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica ... [more]
YKT6_DEBHA7.572e-4145.41Synaptobrevin homolog YKT6 OS=Debaryomyces hanseni... [more]
YKT6_KLULA1.291e-4047.45Synaptobrevin homolog YKT6 OS=Kluyveromyces lactis... [more]
YKT6_BOVIN4.299e-3645.13Synaptobrevin homolog YKT6 OS=Bos taurus GN=YKT6 P... [more]

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Properties
Property NameValue
Genbank descriptionC34007D06EF PostHarvC1 Citrus clementina cDNA clone C34007D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930422 ID=FC930422; Name=FC930422; organism=Citrus clementina; type=EST; length=687bp
GAAAGCTCGATCAAAAAAACATAAAAACAATTTTTATTTTTTTCTCTTTT
CAAAAAACCAAACGACGCCGAATCAGACGAACCGAACAACTTTCACAGCA
GGAGGAGGATGAAGATCACGGCGTTACTGGTTTTGAAGTGCAACCCGGAC
GGATCGGATCCGGTTGTGTTAGCGACCGCCATGGACGTTAGCCATTTCGG
TTACTTTCAACGATCCAGCGTTAAGGAGTTCATCCTCTTCGTCGCTCGCA
CTGTCGGTAAACGGACTCCGCCCGGCCAGCGCCAGTCCGTCCAACACGAA
GAGTACAAGGTGCATTCTTATAACAGGAATGGACTTTGCGCAATGGGATT
CATGGATGATCATTATCCAGTGCGAAGCTCATTCTCTCTTCTCAACCAGG
TGCTAGATGAGTATCAGAAAAATTTTGGTGAATCATGGAGGACTGCACAG
GCAGACAACATGCAACCGTGGCCTTATCTAAATGAAGCTTTGAACAAATA
TCAGGACCCAGCGGAGGCTGATAAGCTGTTGAAAATTCAGAGGGAATTGG
ATGAAACAAAGATTATCCTTCATAAAACTATCGATAGTGTACTTGCACGG
GGTGAAAAGCTGGACAGTTTAGTTGAGAAGAGTTCAGATCTCAGTGCAGC
TTCGCAGATGTTCTNACAGCAGGCAAAGAAACTAAAT
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