FC930428

Overview
NameFC930428
Unique NameFC930428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14393 contig Ccv1_Contig14393:84..816. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930428 vs. ExPASy Swiss-Prot
Match: KINB2_ARATH (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.489e-25
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  353 DQATVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASR-DASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPXSR 658
            D  ++ GFE P+SP++SY+N+  G ED +++PP VPPHLQ TLL+ PA+  D    LP PQ+VILNHLY++      SVVALG THRF +KYVTVVLYK   R
Sbjct:  187 DIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289
[Close]
BLAST of FC930428 vs. ExPASy Swiss-Prot
Match: KINB1_ARATH (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.019e-22
Identity = 52/99 (52.53%), Postives = 67/99 (67.68%), Query Frame = 2 
Query:  362 TVVGFEVPKSPDSSYNNVYPGNEDEARDPPAVPPHLQHTLLSYPASRDASGILPAPQNVILNHLYIENRDVPRSVVALGFTHRFRSKYVTVVLYKPXSR 658
            ++V FE P SPD SY    P  ED A++P AVPP L  TLL    + + + I   PQ+V+LNH++IE    P+S+VALG THRF SKY+TVVLYKP +R
Sbjct:  188 SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLG---TTEETAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283
The following BLAST results are available for this feature:
BLAST of FC930428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KINB2_ARATH8.489e-2556.31SNF1-related protein kinase regulatory subunit bet... [more]
KINB1_ARATH3.019e-2252.53SNF1-related protein kinase regulatory subunit bet... [more]
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Properties
Property NameValue
Genbank descriptionC34007D12EF PostHarvC1 Citrus clementina cDNA clone C34007D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930428 ID=FC930428; Name=FC930428; organism=Citrus clementina; type=EST; length=733bp
GACTCTTGCTTGCAATTTGCTCTGCTGCTCTGCTCTTCTCTGGTCACAAT
ATATTATATTTTTCTTCGAAATTCCTTTTTTTTCTCTGTTATTTCCCATC
AGTTTCATTCTTTTCCATTTTTTTTTTAATTTTCATTCATGAGAATTTTT
CAATTTCCAAAGATCTTTATGTAGTAAGTAGCCAATTGTATTCTTCTCAT
TTCAGGTGGCGGTGAAAGGTTGCGTCTTGGTCATTGAAGAATTTTAGTCT
TAGCTCAGTCGGGGTCAGTTGTGTTGCCTTCTTTCTCTTTTGATGATTTG
GTGCCATTAGGATTTCTCATCCAACATGAACCAATATGATGATGAAAATC
ATGATCAGGCAACAGTAGTTGGATTTGAAGTCCCAAAGTCGCCCGATTCA
AGTTACAACAATGTGTATCCTGGGAACGAGGATGAGGCACGTGACCCTCC
TGCTGTGCCTCCTCATTTGCAACACACATTGCTAAGCTATCCAGCAAGCA
GGGATGCTTCTGGAATTCTTCCTGCACCCCAGAATGTGATTCTAAACCAC
CTTTACATTGAGAATCGAGATGTGCCACGTTCTGTGGTGGCACTTGGATT
TACTCATCGATTCCGTTCCAAGTATGTTACAGTTGTTCTATACAAACCAN
GTTCAAGAAGGGGAAGTACCAGCACCTAATGAGTCAGGATAGAAAATCTC
TTGGGTAGGCTGGATTGGTTTGCCCTTGTACGA
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