FC930430

Overview
NameFC930430
Unique NameFC930430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930430 vs. ExPASy Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.678e-59
Identity = 112/189 (59.26%), Postives = 131/189 (69.31%), Query Frame = 1
Query:  139 MASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGA**SWCI*DIY*CYILLFKFIHGFLYFLGTPKTVRVERSADQVTNS--RVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCR 699
            M SF GTTQKC  CEKTVYLVD+L A+ +VYHKACFRCHHC  TLKLSN+ SF+GV+YC+ HFDQLFK TGSL+KSF+                             GTPK  + ER+  Q T S  R+SS F GT+DKC AC K VYPIE+V VDGT+YH+ACF+C HGGC ISPSNY+AHE RLYC+
Sbjct:    1 MKSFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFD-----------------------------GTPK-FKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCK 159          

HSP 2 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 1
Query:  148 FAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGS 354
            F GT  KC AC K VY ++++  D   YH+ACF+C H   T+  SNY + EG LYCK H  QLFK  G+
Sbjct:  103 FEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGN 171          
BLAST of FC930430 vs. ExPASy Swiss-Prot
Match: XIRP2_MOUSE (Xin actin-binding repeat-containing protein 2 OS=Mus musculus GN=Xirp2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.452e-18
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  133 RDMASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 369
            ++ ++F    + C  C+KTVY ++ L AD + +HK+CFRCHHC   L L NY S  G +YCKPHF QLFK  G+ D+ F
Sbjct: 3245 QEESAFLSDKEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDEGF 3323          
BLAST of FC930430 vs. ExPASy Swiss-Prot
Match: CSRP3_MOUSE (Cysteine and glycine-rich protein 3 OS=Mus musculus GN=Csrp3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.345e-16
Identity = 54/182 (29.67%), Postives = 81/182 (44.51%), Query Frame = 1
Query:  154 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGA**SWCI*DIY*CYILLFKFIHGFLYFLGTPKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCR 699
            G   KC ACEKTVY  +++  + + +HK CF C  C+  L  +   + E  +YCK  + + +   G       G              +      H  L F  +PK  R   +++    S+ S+ F G  +KC  C K+VY  EKV   G  +HK CFRC   G  +  +N    +  LYC+
Sbjct:    5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGFGQGAGC-------------LSTDTGEHLGLQFQQSPKPARAATTSNP---SKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCK 169          
BLAST of FC930430 vs. ExPASy Swiss-Prot
Match: CSRP3_HUMAN (Cysteine and glycine-rich protein 3 OS=Homo sapiens GN=CSRP3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 56/184 (30.43%), Postives = 78/184 (42.39%), Query Frame = 1
Query:  154 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGA**SWCI*DIY*CYILLFKFIHGFLYFLGTPKTVRVERSADQVTNSRVSSMFA--GTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCR 699
            G   KC ACEKTVY  +++  + + +HK CF C  C+  L  +   + E  +YCK  + + +   G       G              +      H  L F  +PK  R       VT S  S   A  G  +KC  C K+VY  EKV   G  +HK CFRC   G  +  +N    +  LYC+
Sbjct:    5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGC-------------LSTDTGEHLGLQFQQSPKPAR------SVTTSNPSKFTAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCK 169          
BLAST of FC930430 vs. ExPASy Swiss-Prot
Match: CSRP3_BOVIN (Cysteine and glycine-rich protein 3 OS=Bos taurus GN=CSRP3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.295e-16
Identity = 56/184 (30.43%), Postives = 78/184 (42.39%), Query Frame = 1
Query:  154 GTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGA**SWCI*DIY*CYILLFKFIHGFLYFLGTPKTVRVERSADQVTNSRVSSMFA--GTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCR 699
            G   KC ACEKTVY  +++  + + +HK CF C  C+  L  +   + E  +YCK  + + +   G       G              +      H  L F  +PK  R        T S   S FA  G  +KC  C K+VY  EKV   G  +HK CFRC   G  +  +N    +  LYC+
Sbjct:    5 GGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGC-------------LSTDTGEHLGLQFQQSPKQAR------SATTSSNPSKFAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCK 169          
BLAST of FC930430 vs. ExPASy Swiss-Prot
Match: LIMA1_HUMAN (LIM domain and actin-binding protein 1 OS=Homo sapiens GN=LIMA1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  130 PRDMASF-AGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 369
            P+ M  F A   + C  C+KTVY +++L A+ +V+H +CFRC +C   L L  Y S  G +YCKPHF+QLFK  G+ D+ F
Sbjct:  376 PKAMKKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGF 456          
BLAST of FC930430 vs. ExPASy Swiss-Prot
Match: LIMD2_RAT (LIM domain-containing protein 2 OS=Rattus norvegicus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1
Query:  121 VEDPRDMASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 369
            V+  +  +  A   + C AC+KTVY +++L AD  ++H +CF C HC   L L +Y +  G  YCKPHF QLFK  G+ D+ F
Sbjct:   25 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDEGF 107          
BLAST of FC930430 vs. ExPASy Swiss-Prot
Match: LIMD2_HUMAN (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1
Query:  121 VEDPRDMASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 369
            V+  +  +  A   + C AC+KTVY +++L AD  ++H +CF C HC   L L +Y +  G  YCKPHF QLFK  G+ D+ F
Sbjct:   24 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGF 106          
BLAST of FC930430 vs. ExPASy Swiss-Prot
Match: LIMD2_BOVIN (LIM domain-containing protein 2 OS=Bos taurus GN=LIMD2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.112e-16
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1
Query:  121 VEDPRDMASFAGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 369
            V+  +  +  A   + C AC+KTVY +++L AD  ++H +CF C HC   L L +Y +  G  YCKPHF QLFK  G+ D+ F
Sbjct:   25 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGF 107          
BLAST of FC930430 vs. ExPASy Swiss-Prot
Match: LIMA1_MOUSE (LIM domain and actin-binding protein 1 OS=Mus musculus GN=Lima1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.720e-16
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  151 AGTTQKCKACEKTVYLVDQLTADNKVYHKACFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSF 369
            A   + C  C+KTVY +++L A+ +V+H +CFRC +C   L L  Y S  G +YCKPHF+QLFK  G+ D+ F
Sbjct:  382 APAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGF 454          
The following BLAST results are available for this feature:
BLAST of FC930430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
SF3_HELAN1.678e-5959.26Pollen-specific protein SF3 OS=Helianthus annuus G... [more]
XIRP2_MOUSE2.452e-1848.10Xin actin-binding repeat-containing protein 2 OS=M... [more]
CSRP3_MOUSE1.345e-1629.67Cysteine and glycine-rich protein 3 OS=Mus musculu... [more]
CSRP3_HUMAN2.295e-1630.43Cysteine and glycine-rich protein 3 OS=Homo sapien... [more]
CSRP3_BOVIN2.295e-1630.43Cysteine and glycine-rich protein 3 OS=Bos taurus ... [more]
LIMA1_HUMAN2.997e-1645.68LIM domain and actin-binding protein 1 OS=Homo sap... [more]
LIMD2_RAT5.112e-1642.17LIM domain-containing protein 2 OS=Rattus norvegic... [more]
LIMD2_HUMAN5.112e-1642.17LIM domain-containing protein 2 OS=Homo sapiens GN... [more]
LIMD2_BOVIN5.112e-1642.17LIM domain-containing protein 2 OS=Bos taurus GN=L... [more]
LIMA1_MOUSE8.720e-1646.58LIM domain and actin-binding protein 1 OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionC34007E02EF PostHarvC1 Citrus clementina cDNA clone C34007E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930430 ID=FC930430; Name=FC930430; organism=Citrus clementina; type=EST; length=701bp
GATTTTTTTGAAAAGAGAAAACATTGTTGTAGTTAGAAGACAAAGTCTTG
CTTGTTTCTCAGCATCGAAGACTTTGTAAGTGTTCGAGGAAGTCTTAGCT
TTCTTTGGTATTTGTTGTGTGTGGAAGATCCAAGAGATATGGCGAGTTTT
GCAGGGACAACACAGAAGTGTAAGGCGTGTGAGAAGACGGTATACTTGGT
TGATCAACTTACTGCTGATAACAAAGTCTATCACAAGGCTTGTTTTAGAT
GCCACCATTGCAAGGGCACCCTCAAGCTGAGCAACTATTGCTCCTTTGAG
GGAGTTTTATATTGCAAGCCTCACTTTGATCAGCTGTTTAAGATGACTGG
CAGCTTGGATAAAAGTTTTGAAGGTGCTTAATAATCATGGTGTATTTAAG
ATATTTATTAATGCTATATCCTCTTGTTTAAGTTTATCCATGGGTTCCTT
TATTTTCTAGGTACTCCAAAAACTGTTAGAGTTGAGAGATCTGCTGATCA
GGTCACAAATAGCAGAGTTTCAAGTATGTTTGCTGGAACTCAAGATAAAT
GCGTTGCTTGCAAGAAGACTGTTTACCCAATTGAAAAGGTGGCAGTTGAT
GGTACATCATACCATAAAGCCTGTTTCAGGTGCACCCATGGAGGTTGTGT
AATCAGCCCATCAAACTATGTGGCGCATGAGCATCGTCTCTACTGTAGGC
A
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