FC930431

Overview
NameFC930431
Unique NameFC930431
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930431_ssr159 microsatellite FC930431_ssr159:159..168. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7998 contig Ccv1_Contig7998:112..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930431 vs. ExPASy Swiss-Prot
Match: HMCS_ARATH (Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=2 SV=2)

HSP 1 Score: 313.153 bits (801), Expect = 9.241e-85
Identity = 148/165 (89.70%), Postives = 159/165 (96.36%), Query Frame = 1
Query:  223 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPSRPTGGAAAV 717
            MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQ+C+AFC+E+EDVISMS  AVT+L EKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGTAAL NCVNWVES+SWDGRYGLV+CTDSAVYAEGP+RPTGGAAA+
Sbjct:    1 MAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVTSLFEKYKIDPNQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAI 165          
BLAST of FC930431 vs. ExPASy Swiss-Prot
Match: HMCS1_CHICK (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Gallus gallus GN=HMGCS1 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.145e-57
Identity = 106/163 (65.03%), Postives = 128/163 (78.53%), Query Frame = 1
Query:  229 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPSRPTGGAAAV 717
            K+VGI+A++IYFP   V Q  LE +DG   GKYTIGLGQ  M FCS+ ED+ S+ LT V  L+E+  +    IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTD+EG+D+TNACYGGTAALFN +NW+ESSSWDGRY LVV  D AVYA G +RPTGGA AV
Sbjct:   15 KDVGIVALEIYFPSQYVDQTELEKYDGVDAGKYTIGLGQSKMGFCSDREDINSLCLTVVQKLMERNSLSYDCIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDIAVYATGNARPTGGAGAV 177          
BLAST of FC930431 vs. ExPASy Swiss-Prot
Match: HMCS1_PONAB (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Pongo abelii GN=HMGCS1 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.065e-56
Identity = 105/163 (64.42%), Postives = 129/163 (79.14%), Query Frame = 1
Query:  229 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPSRPTGGAAAV 717
            K+VGI+A++IYFP   V Q  LE +DG + GKYTIGLGQ  M FC++ ED+ S+ +T V NL+E+  +    IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGTAA+FN VNW+ESSSWDGRY LVV  D AVYA G +RPTGG  AV
Sbjct:   15 KDVGIVALEIYFPSQYVDQAELEKYDGVAAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAV 177          
BLAST of FC930431 vs. ExPASy Swiss-Prot
Match: HMCS1_HUMAN (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens GN=HMGCS1 PE=1 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.391e-56
Identity = 105/163 (64.42%), Postives = 128/163 (78.53%), Query Frame = 1
Query:  229 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPSRPTGGAAAV 717
            K+VGI+A++IYFP   V Q  LE +DG   GKYTIGLGQ  M FC++ ED+ S+ +T V NL+E+  +    IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNACYGGTAA+FN VNW+ESSSWDGRY LVV  D AVYA G +RPTGG  AV
Sbjct:   15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAV 177          
BLAST of FC930431 vs. ExPASy Swiss-Prot
Match: HMCS1_CRIGR (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Cricetulus griseus GN=HMGCS1 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.098e-56
Identity = 104/163 (63.80%), Postives = 128/163 (78.53%), Query Frame = 1
Query:  229 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPSRPTGGAAAV 717
            K+VGI+A++IYFP   V Q  LE +DG   GKYTIGLGQ  M FC++ ED+ S+ LT V NL+E+  +    IGRLEVG+ET+IDKSKS+K+ LMQ+FE+ GNTDIEG+D+TNACYGGTAA+FN VNW+ESSSWDGRY LVV  D A+YA G +RPTGG  AV
Sbjct:   15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQNLMERNSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAIYATGNARPTGGVGAV 177          
BLAST of FC930431 vs. ExPASy Swiss-Prot
Match: HMCS1_MOUSE (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Mus musculus GN=Hmgcs1 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.046e-56
Identity = 104/163 (63.80%), Postives = 128/163 (78.53%), Query Frame = 1
Query:  229 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPSRPTGGAAAV 717
            K+VGI+A++IYFP   V Q  LE +DG   GKYTIGLGQ  M FC++ ED+ S+ LT V  L+E++ +    IGRLEVG+ET+IDKSKS+K+ LMQ+FE+ GNTDIEG+D+TNACYGGTAA+FN VNWVESSSWDGRY LVV  D A+YA G +RPTGG  AV
Sbjct:   15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQKLMERHSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWVESSSWDGRYALVVAGDIAIYATGNARPTGGVGAV 177          
BLAST of FC930431 vs. ExPASy Swiss-Prot
Match: HMCSA_DICDI (Hydroxymethylglutaryl-CoA synthase A OS=Dictyostelium discoideum GN=hgsA PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.284e-56
Identity = 101/166 (60.84%), Postives = 127/166 (76.51%), Query Frame = 1
Query:  220 TMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPSRPTGGAAAV 717
            T  +N+GI  +++YFP T V QE LE  DG S+GKYT+GLGQ  MAFC + ED+ S+SL AV NL++K+ +DP  IGRLEVG+ETVIDKSKS+KT LM +F K GNT I+G+D+ NACYGGT+AL N + W+ESS WDGR  +VV  D AVY +GP+RPTGGA  V
Sbjct:    2 TKPENIGIHGIEVYFPSTYVAQEDLEKFDGVSQGKYTLGLGQTNMAFCGDREDIYSLSLNAVNNLMDKFNVDPNSIGRLEVGTETVIDKSKSVKTVLMDLFAKHGNTSIDGIDTINACYGGTSALHNALQWMESSYWDGRNAIVVAGDIAVYEKGPARPTGGAGVV 167          
BLAST of FC930431 vs. ExPASy Swiss-Prot
Match: HMCS1_RAT (Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Rattus norvegicus GN=Hmgcs1 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.177e-55
Identity = 103/163 (63.19%), Postives = 127/163 (77.91%), Query Frame = 1
Query:  229 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPSRPTGGAAAV 717
            K+VGI+A++IYFP   V Q  LE +DG   GKYTIGLGQ  M FC++ ED+ S+ LT V  L+E+  +    IGRLEVG+ET+IDKSKS+K+ LMQ+FE+ GNTDIEG+D+TNACYGGTAA+FN VNW+ESSSWDGRY LVV  D A+YA G +RPTGG  AV
Sbjct:   15 KDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQKLMERNSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIAIYASGNARPTGGVGAV 177          
BLAST of FC930431 vs. ExPASy Swiss-Prot
Match: HMCS2_HUMAN (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Homo sapiens GN=HMGCS2 PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.301e-54
Identity = 103/182 (56.59%), Postives = 132/182 (72.53%), Query Frame = 1
Query:  172 HIFFIWAFSVFENQIKTMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPSRPTGGAAAV 717
            H  F  A +V   +  T  K+VGILA+++YFP   V Q  LE ++    GKYT+GLGQ  M FCS  ED+ S+ LT V  L+E+ ++    +GRLEVG+ET+IDKSK++KT LM++F+  GNTDIEG+D+TNACYGGTA+LFN  NW+ESSSWDGRY +VVC D AVY  G +RPTGGA AV
Sbjct:   33 HQRFSTASAVPLAKTDTWPKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERIQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNARPTGGAGAV 214          
BLAST of FC930431 vs. ExPASy Swiss-Prot
Match: HMCS2_BOVIN (Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Bos taurus GN=HMGCS2 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.899e-54
Identity = 101/166 (60.84%), Postives = 125/166 (75.30%), Query Frame = 1
Query:  220 TMAKNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQECMAFCSEVEDVISMSLTAVTNLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKFGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPSRPTGGAAAV 717
            T  K+VGILAM++YFP   V Q  LE  +    G+YT+GLGQ  M FCS  EDV S+ LT V  L+E+ ++    +GRLEVG+ET+IDKSK++KT LM++F+  GNTDIEG+D+TNACYGGTA+LFN  NW+ESSSWDGRY LVVC D AVY  G +RPTGGA AV
Sbjct:   49 TWPKDVGILAMEVYFPAQYVDQTELEKFNKVEAGRYTVGLGQTQMGFCSVQEDVNSLCLTVVQQLMERTQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSSWDGRYALVVCGDIAVYPSGNARPTGGAGAV 214          
The following BLAST results are available for this feature:
BLAST of FC930431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
HMCS_ARATH9.241e-8589.70Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis ... [more]
HMCS1_CHICK2.145e-5765.03Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_PONAB1.065e-5664.42Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_HUMAN1.391e-5664.42Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_CRIGR3.098e-5663.80Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS1_MOUSE4.046e-5663.80Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCSA_DICDI5.284e-5660.84Hydroxymethylglutaryl-CoA synthase A OS=Dictyostel... [more]
HMCS1_RAT1.177e-5563.19Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS... [more]
HMCS2_HUMAN1.301e-5456.59Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]
HMCS2_BOVIN2.899e-5460.84Hydroxymethylglutaryl-CoA synthase, mitochondrial ... [more]

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Properties
Property NameValue
Genbank descriptionC34007E03EF PostHarvC1 Citrus clementina cDNA clone C34007E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930431 ID=FC930431; Name=FC930431; organism=Citrus clementina; type=EST; length=720bp
GATCGCCAATTTTCTCTCCGAATATTGAGGCCTGTCTTTCTTTCTGTCTC
TGAACGGCTAGCTGGGCTACGTTTTACAAACTCAAGCCAACAGCAGAGCA
AGAAAGAAAGCAAAGCAACGCAAAACACATTTTCGTTGTTGTGCTGTTTT
CTTGATACATATATATATTTACATATATTTTTCATCTGGGCATTTTCTGT
TTTTGAAAACCAGATAAAAACAATGGCAAAGAATGTTGGAATCCTCGCTA
TGGACATCTACTTCCCTCCTACTTGCGTCCAGCAGGAAGCTTTGGAGGCT
CATGATGGTGCAAGCAAAGGAAAATATACAATCGGGCTTGGACAGGAGTG
CATGGCATTTTGTTCAGAGGTGGAAGATGTCATCTCAATGAGCTTGACAG
CTGTTACTAACCTCCTAGAGAAGTATAAGATTGATCCAAAACAAATTGGT
CGTCTCGAAGTAGGAAGCGAAACTGTGATAGACAAGAGCAAATCCATTAA
GACTTTTTTGATGCAAATTTTTGAGAAATTTGGAAATACTGACATTGAAG
GTGTTGACTCGACCAATGCCTGCTACGGAGGAACTGCTGCATTATTTAAC
TGTGTGAACTGGGTGGAGAGTAGTTCATGGGACGGGCGCTATGGGCTCGT
TGTGTGTACCGACAGTGCGGTTTATGCAGAAGGACCCAGCAGACCCACTG
GAGGAGCAGCTGCTGTTGTC
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