FC930436

Overview
NameFC930436
Unique NameFC930436
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15153 contig Ccv1_Contig15153:1..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 5.181e-85
Identity = 148/191 (77.49%), Postives = 168/191 (87.96%), Query Frame = 3
Query:  129 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFW 701
            MALVLH G  NKN FK LIAAEY GV+V+L +NFEMGV+NK+PEFLKMNPLGK+PVLETP+G VFESNAIARYVARLK ++ LCGSSLIDY+H+EQWMDFSA E+DANI RWLYPRLG+  Y+P+ EE A+ +LKR+L ALN HLASNTYLVGHSVTLADIVM CNLYYGF  I+ K+FTSEFPHVERYFW
Sbjct:    1 MALVLHCGSGNKNAFKALIAAEYTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGAVFESNAIARYVARLKDNSSLCGSSLIDYSHIEQWMDFSATEVDANIGRWLYPRLGFGPYVPVLEEFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEFPHVERYFW 191          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G2_ORYSJ (Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 1.508e-84
Identity = 148/191 (77.49%), Postives = 167/191 (87.43%), Query Frame = 3
Query:  129 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFW 701
            MALVLH G  NKN FK LIAAEY+GV+V+L +NF+MGV+NK+PEFLKMNP+GK+PVLETPDGPVFESNAIARYV R KADN L GSSLI+YAH+EQW DFSA E+DANI +WLYPRLG   Y+ ++EE A+AALKR+L ALN HLASNTYLVGHSVTLADIVM CNLY GF  IMTK+FTSEFPHVERYFW
Sbjct:    1 MALVLHAGSGNKNAFKALIAAEYSGVKVELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGPVFESNAIARYVTRSKADNPLYGSSLIEYAHIEQWNDFSATEVDANIGKWLYPRLGIAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVERYFW 191          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G1_ORYSJ (Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 6.334e-83
Identity = 144/191 (75.39%), Postives = 167/191 (87.43%), Query Frame = 3
Query:  129 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFW 701
            MALVLH    NKN FK LIAAEY+GV+V+LA+NF+MGV+NK+PE+LKMNP+GKVP+LETPDGPVFESNAIARYV R K+DN L GSSLI+YAH+EQW+DFSA E+DAN  +WL+PRLG+  Y+ ++EE A+AALKR+L ALN HLASNTYLVGHSVTLADIVM CNLY GF  IMTK FTSEFPHVERYFW
Sbjct:    1 MALVLHTFDGNKNAFKALIAAEYSGVKVELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGPVFESNAIARYVTRSKSDNPLYGSSLIEYAHIEQWIDFSATEVDANTGKWLFPRLGFAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEFPHVERYFW 191          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 9.146e-82
Identity = 142/191 (74.35%), Postives = 165/191 (86.39%), Query Frame = 3
Query:  129 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFW 701
            MALVLH G+ NKN FK LI AEY GV+V+LA +FEMGVTNK+PE+LK+NP+GKVP+LETPDGP+FESNAIARYVARLKADN L GSSLIDYAH+EQW+DF ++EIDANI  W  PR GY  Y+P AEE A++ALKRAL ALN HLASNTYLVGH VTLADI++ CNL++GF  +M K+FTSEFPHVERYFW
Sbjct:    1 MALVLHAGKTNKNAFKTLIVAEYTGVKVELAPDFEMGVTNKTPEYLKLNPIGKVPLLETPDGPIFESNAIARYVARLKADNPLIGSSLIDYAHIEQWIDFGSLEIDANIISWFRPRFGYAVYLPPAEEAAISALKRALGALNTHLASNTYLVGHFVTLADIIVTCNLFFGFTKLMIKSFTSEFPHVERYFW 191          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.083e-74
Identity = 133/191 (69.63%), Postives = 159/191 (83.25%), Query Frame = 3
Query:  129 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFW 701
            MALV+H  + NK   K LIAAEYAGV+++ + +F+MGVTNKSPEFLKMNP+GKVPVLETP+GP+FESNAIARYV+R   DN L GSSLI+YAH+EQW+DFS++EIDAN+ +W  PR+GY  +   AEE A++ALKR L+ALN HLASNT+LVGHSVTLADIV ICNL  GF  +MTK FTS FPHVERYFW
Sbjct:    1 MALVMHTYKGNKGANKALIAAEYAGVKIEESADFQMGVTNKSPEFLKMNPIGKVPVLETPEGPIFESNAIARYVSRKNGDNSLNGSSLIEYAHIEQWIDFSSLEIDANMLKWFAPRMGYAPFSAPAEEAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMTKKFTSAFPHVERYFW 191          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.019e-74
Identity = 132/191 (69.11%), Postives = 157/191 (82.20%), Query Frame = 3
Query:  129 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFW 701
            MALVLH  + NK+  K LIAAEY GV++ +  +F+MGVTNK+P FLKMNP+GKVPVLETP+G VFESNAIARYV+RL  DN L GSSLI+YA +EQW+DFS++EI A+I RW  PR+G+M Y   AEEGA++ LKRALDALN HL SNTYLVGHS+TLADI+ +CNL  GF  +MTK FTSEFPHVERYFW
Sbjct:    1 MALVLHTYKGNKSAEKALIAAEYVGVQIDVPSDFQMGVTNKTPAFLKMNPIGKVPVLETPEGSVFESNAIARYVSRLNGDNSLNGSSLIEYAQIEQWIDFSSLEIYASILRWFGPRMGFMPYSAPAEEGAISTLKRALDALNTHLTSNTYLVGHSITLADIITVCNLNLGFATVMTKKFTSEFPHVERYFW 191          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G_ARTSA (Elongation factor 1-gamma OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.869e-34
Identity = 81/187 (43.32%), Postives = 115/187 (61.50%), Query Frame = 3
Query:  141 LHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGP-VFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYF 698
            L+   EN   FK LIAA+Y+G ++++A++F  G TNKS  FLK  PLGKVP  E+ DG  + ESNAIA YVA    +  L GSS ++ A + QWM F+  EI      W++P LG MQ+   A   A   + +AL AL+ HL + TYLVG  +TLADIV+ C L + ++H++ + F   + +  R+F
Sbjct:    6 LYTYPENFRAFKALIAAQYSGAKLEIAKSFVFGETNKSDAFLKSFPLGKVPAFESADGHCIAESNAIAYYVA----NETLRGSSDLEKAQIIQWMTFADTEILPASCTWVFPVLGIMQFNKQATARAKEDIDKALQALDDHLLTRTYLVGERITLADIVVTCTLLHLYQHVLDEAFRKSYVNTNRWF 188          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1GA_XENLA (Elongation factor 1-gamma-A OS=Xenopus laevis GN=eef1g-A PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.187e-34
Identity = 81/190 (42.63%), Postives = 116/190 (61.05%), Query Frame = 3
Query:  141 LHVGQENKNGFKGLIAAEYAGVEVKLAEN---FEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYF 698
            L+   +N   +K LIAA+Y+G  +K+A +   F+ GVTNK+PEFLK  PLGKVP  E  DG  +FES+AIA YV     +++L G++ +  A V QW+ FS   I    S W++P LG MQY   A E A   +K  L  L+ HL + T+LVG  +TLADI + C+L + +K ++  +F   F +V R+F
Sbjct:    6 LYTYPDNWRAYKPLIAAQYSGFPIKVASSAPEFQFGVTNKTPEFLKKFPLGKVPAFEGKDGFCLFESSAIAHYVG----NDELRGTTRLHQAQVIQWVSFSDSHIVPPASAWVFPTLGIMQYNKQATEQAKEGIKTVLGVLDSHLQTRTFLVGERITLADITVTCSLLWLYKQVLEPSFRQPFGNVTRWF 191          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G_RABIT (Elongation factor 1-gamma OS=Oryctolagus cuniculus GN=EEF1G PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 2.698e-33
Identity = 80/190 (42.11%), Postives = 113/190 (59.47%), Query Frame = 3
Query:  141 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYF 698
            L+   EN   FK LIAA+Y+G +V++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   +KR L  L+ HL + T+LVG  VTLADI ++C L + +K ++  +F   FP+  R+F
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDAHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWF 191          
BLAST of FC930436 vs. ExPASy Swiss-Prot
Match: EF1G_MOUSE (Elongation factor 1-gamma OS=Mus musculus GN=Eef1g PE=1 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 2.698e-33
Identity = 80/190 (42.11%), Postives = 113/190 (59.47%), Query Frame = 3
Query:  141 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYF 698
            L+   EN   FK LIAA+Y+G +V++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   +KR L  L+ HL + T+LVG  VTLADI ++C L + +K ++  +F   FP+  R+F
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWF 191          
The following BLAST results are available for this feature:
BLAST of FC930436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
EF1G3_ORYSJ5.181e-8577.49Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]
EF1G2_ORYSJ1.508e-8477.49Elongation factor 1-gamma 2 OS=Oryza sativa subsp.... [more]
EF1G1_ORYSJ6.334e-8375.39Elongation factor 1-gamma 1 OS=Oryza sativa subsp.... [more]
EF1G_PRUAV9.146e-8274.35Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G2_ARATH1.083e-7469.63Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]
EF1G1_ARATH7.019e-7469.11Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]
EF1G_ARTSA1.869e-3443.32Elongation factor 1-gamma OS=Artemia salina PE=1 S... [more]
EF1GA_XENLA3.187e-3442.63Elongation factor 1-gamma-A OS=Xenopus laevis GN=e... [more]
EF1G_RABIT2.698e-3342.11Elongation factor 1-gamma OS=Oryctolagus cuniculus... [more]
EF1G_MOUSE2.698e-3342.11Elongation factor 1-gamma OS=Mus musculus GN=Eef1g... [more]

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Properties
Property NameValue
Genbank descriptionC34007E08EF PostHarvC1 Citrus clementina cDNA clone C34007E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930436 ID=FC930436; Name=FC930436; organism=Citrus clementina; type=EST; length=703bp
CTCCACAAAAACCCTAGTTCGCTTCTTTTTGTCGCTCTCTTTTTTTTAAA
CTCCCAGTCGCTCTGTGGCCTTTCAGGAGAACGCTCGCATTCATCTGTAA
TTTGAGCGAATCGTTTCTCCGTTAAGCCATGGCTCTGGTCTTGCATGTTG
GGCAGGAAAACAAAAATGGATTCAAAGGACTCATTGCTGCTGAGTACGCT
GGTGTGGAAGTCAAATTGGCTGAGAATTTTGAGATGGGTGTCACTAATAA
ATCCCCTGAATTTTTGAAGATGAACCCTCTTGGGAAGGTTCCTGTGTTGG
AGACACCTGATGGTCCGGTTTTTGAGAGCAATGCCATTGCCCGTTATGTT
GCACGTCTGAAAGCTGACAATCAACTATGTGGTTCTTCTCTGATCGATTA
TGCTCATGTTGAGCAGTGGATGGATTTTTCTGCCATGGAGATTGATGCTA
ATATCTCCAGGTGGTTATATCCAAGACTTGGATATATGCAATACATTCCT
CTGGCTGAGGAAGGTGCTGTTGCCGCACTGAAGAGAGCATTGGATGCTTT
GAACATTCATTTGGCTTCAAATACGTACTTGGTTGGCCATTCTGTCACCC
TGGCTGACATTGTCATGATATGCAATTTATATTATGGATTTAAGCACATC
ATGACGAAGACTTTCACCTCTGAGTTTCCCCATGTTGAGAGATACTTTTG
GAC
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