FC930441

Overview
NameFC930441
Unique NameFC930441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930441_ssr26 microsatellite FC930441_ssr26:26..35. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig679 contig Ccv1_Contig679:22..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930441 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.342e-16
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:  293 SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQ 592
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   G     +I R +T   +TVL+A FG+R+L       P  GQ
Sbjct:   89 TNLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFG-YATTVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQ 187          
BLAST of FC930441 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 47/100 (47.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:  293 SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQ 592
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   G     +I R +T   +T L+A FG+R+L       P  GQ
Sbjct:   89 ANLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFG-YATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQ 187          
BLAST of FC930441 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 47/100 (47.00%), Postives = 65/100 (65.00%), Query Frame = 2
Query:  293 SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQ 592
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   G     +I R +T   +T L+A FG+R+L       P  GQ
Sbjct:   89 TNLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFG-YATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQ 187          
BLAST of FC930441 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.203e-12
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 2
Query:  314 AFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLL 556
            + I S SMI   EIGD+TFI+AAL+A  + + TV +G+ SALF+MT+L   LG   P L  RK T+    VL+  FG+++L
Sbjct:   49 SLIFSISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKML 129          
BLAST of FC930441 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:  314 AFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRL 553
            +F+ S SMI +SEIGD+TF+IAALMAMRH +  V S A ++L +MT+LS  +G      +S ++T   A +L+  FG +L
Sbjct:   41 SFLMSVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLSERYTAFFAGILFLVFGYKL 120          
The following BLAST results are available for this feature:
BLAST of FC930441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TM165_HUMAN2.342e-1648.00Transmembrane protein 165 OS=Homo sapiens GN=TMEM1... [more]
TM165_RAT5.218e-1647.00Transmembrane protein 165 OS=Rattus norvegicus GN=... [more]
TM165_MOUSE5.218e-1647.00Transmembrane protein 165 OS=Mus musculus GN=Tmem1... [more]
YD68_SCHPO1.203e-1246.91UPF0016 membrane protein C17G8.08c OS=Schizosaccha... [more]
YB37_YEAST7.798e-1246.25UPF0016 membrane protein YBR187W OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionC34007F02EF PostHarvC1 Citrus clementina cDNA clone C34007F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930441 ID=FC930441; Name=FC930441; organism=Citrus clementina; type=EST; length=714bp
GAGAGATCTTGGCGCTTCAGCAAGGTCTCTCTCTCTTTCTCTCTGGCAGA
TCTGTTTGTTTCCCTCCAATTCTCTCTAAATTTACGACATGGGTTTGGTT
TCAAACCCCGTCCGCTTTCTCTTCGTCGCCCTTTCCATCTTCTCTGCTCT
TTCTGGCATCTCTGCTCAGGACGTCCTTTTTGAATCCGATAATGAAGACC
CATCTCGATCTGCTAAAGATCTCGGCCGCCGTGGCTTGATTTTATCGCAA
GACCTTGAGAATGAACTCGGTACGATCCCTTTGAATATCGACTCGGGTCT
TGGAGTTTTTGATGCCTTCATCGCAAGTTTTTCGATGATCATTGTTAGTG
AGATTGGAGATGAGACTTTCATAATAGCAGCACTTATGGCAATGCGTCAT
CCCAAGTCAACCGTTTTGTCGGGTGCGCTCTCTGCTCTGTTTGTTATGAC
TGTACTTTCTACTGGACTAGGTAGGATTGTGCCGAACTTGATATCAAGGA
AGCATACAAATAGTGCTGCTACAGTTCTGTATGCATTTTTTGGGCTGCGG
TTACTATACATAGCTTGGATGTCAGATCCAAAATCAGGTCAGAAGAAAGA
AATGGAGGAGGTGGAGGAGAAACTTGAGTCAGGGCAAGGGAAGACAACCT
TCCGCCGTTTCTTCTCAAGAATCTGTACTCCCATATTTCTAGAGTCATTT
ATTTTGACATTCCT
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