FC930448

Overview
NameFC930448
Unique NameFC930448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15154 contig Ccv1_Contig15154:1..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930448 vs. ExPASy Swiss-Prot
Match: APR1_ARATH (5'-adenylylsulfate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=APR1 PE=1 SV=2)

HSP 1 Score: 352.829 bits (904), Expect = 1.169e-96
Identity = 181/220 (82.27%), Postives = 199/220 (90.45%), Query Frame = 2
Query:  119 KVSQIGSFRLVDRANVASTSLS---QRRSLVRPLNAEPKRNDSVVPLAATLATPEVAEKVEGEE--DFEQLAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRAPQGLRAWITGQRKDQSPGTRSEIPVVQVDPV 763
            KVSQIGS RL+DR +VA  SL+   +R S V+PLNAEPK  DS++PLAAT+   E+AE+VE  E  DFE+LAK+LENASPLEIMD+ALEK+GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFD VEKH+GIRIEYMFPD+VEVQ LVRSKGLFSFYEDGHQECCRVRKVRPLRRA +GL+AWITGQRKDQSPGTRSEIPVVQVDPV
Sbjct:   27 KVSQIGSLRLLDRVHVAPVSLNLSGKRSSSVKPLNAEPKTKDSMIPLAATMVA-EIAEEVEVVEIEDFEELAKKLENASPLEIMDKALEKYGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDAVEKHYGIRIEYMFPDSVEVQGLVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQVDPV 245          
BLAST of FC930448 vs. ExPASy Swiss-Prot
Match: APR3_ARATH (5'-adenylylsulfate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=APR3 PE=2 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 3.643e-90
Identity = 175/244 (71.72%), Postives = 196/244 (80.33%), Query Frame = 2
Query:   44 MALAVTXXXXXXXXXXXXXXXXNDIKVSQIGSFRLVDRANV--ASTSLSQRRSLVRPLNAEPKRNDSVVPLAATLATPEVAEKVE--GEEDFEQLAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRAPQGLRAWITGQRKDQSPGTRSEIPVVQVDPV 763
            MALA+                 +D+KV++IGS RL++R NV  AS SLS +RS V+ LN +    +S+V         EV EK++    EDFE+LAK LENASPLEIMD+ALEKFGNDIAIAFSGAEDVALIEYAHLTGRP+RVFSLDTGRLNPETYR FD VEKH+GIRIEYMFPDAVEVQALVR+KGLFSFYEDGHQECCR+RKVRPLRRA +GLRAWITGQRKDQSPGTRSEIPVVQVDPV
Sbjct:    1 MALAINVSSSSSSAISSSSFPSSDLKVTKIGSLRLLNRTNVSAASLSLSGKRSSVKALNVQSITKESIV-------ASEVTEKLDVVEVEDFEELAKRLENASPLEIMDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPYRVFSLDTGRLNPETYRLFDTVEKHYGIRIEYMFPDAVEVQALVRNKGLFSFYEDGHQECCRIRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPV 237          
BLAST of FC930448 vs. ExPASy Swiss-Prot
Match: APR2_ARATH (5'-adenylylsulfate reductase 2, chloroplastic OS=Arabidopsis thaliana GN=APR2 PE=2 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 6.431e-87
Identity = 168/219 (76.71%), Postives = 186/219 (84.93%), Query Frame = 2
Query:  110 NDIKVSQIGSFRLVDRANVASTSLSQRRSLVRPLNAEP-KRNDSVVPLAATLATPEVAEKVEGEEDFEQLAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRAPQGLRAWITGQRKDQSPGTRSEIPVVQVDPV 763
            ++ K  QI S RL DR     T LSQRR  ++PLNAE   R++S V  A+TL  PEV EK    EDFEQLAK+LE+ASPLEIMD+ALE+FG+ IAIAFSGAEDVALIEYA LTG+PFRVFSLDTGRLNPETYR FD VEK +GIRIEYMFPDAVEVQALVR+KGLFSFYEDGHQECCRVRKVRPLRRA +GL+AWITGQRKDQSPGTRSEIP+VQVDPV
Sbjct:   24 SESKALQICSIRLSDR-----THLSQRRYSMKPLNAESHSRSESWVTRASTLIAPEVEEKGGEVEDFEQLAKKLEDASPLEIMDKALERFGDQIAIAFSGAEDVALIEYARLTGKPFRVFSLDTGRLNPETYRLFDAVEKQYGIRIEYMFPDAVEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPIVQVDPV 237          
BLAST of FC930448 vs. ExPASy Swiss-Prot
Match: CYSH_PSEAE (Phosphoadenosine phosphosulfate reductase OS=Pseudomonas aeruginosa GN=cysH PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.039e-44
Identity = 83/152 (54.61%), Postives = 112/152 (73.68%), Query Frame = 2
Query:  302 DFEQLAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRAPQGLRAWITGQRKDQSPGTRSEIPVVQVD 757
            D   LA  L + SP +I+  A E FG+++ I+FSGAEDV L++ A    R  +VFSLDTGRL+PETYRF D+V +H+GI I+ + PD   ++ LV+ KGLFSFY DGH ECC +RK+ PL+R   G+RAW TGQR+DQSPGTRS++ V+++D
Sbjct:   29 DLPALASSLADKSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQVAVLEID 180          
BLAST of FC930448 vs. ExPASy Swiss-Prot
Match: CYSH_PSEAB (Phosphoadenosine phosphosulfate reductase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=cysH PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.039e-44
Identity = 83/152 (54.61%), Postives = 112/152 (73.68%), Query Frame = 2
Query:  302 DFEQLAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRAPQGLRAWITGQRKDQSPGTRSEIPVVQVD 757
            D   LA  L + SP +I+  A E FG+++ I+FSGAEDV L++ A    R  +VFSLDTGRL+PETYRF D+V +H+GI I+ + PD   ++ LV+ KGLFSFY DGH ECC +RK+ PL+R   G+RAW TGQR+DQSPGTRS++ V+++D
Sbjct:   29 DLPALASSLADKSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQVAVLEID 180          
BLAST of FC930448 vs. ExPASy Swiss-Prot
Match: CYSH_PSEA8 (Phosphoadenosine phosphosulfate reductase OS=Pseudomonas aeruginosa (strain LESB58) GN=cysH PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.039e-44
Identity = 83/152 (54.61%), Postives = 112/152 (73.68%), Query Frame = 2
Query:  302 DFEQLAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRAPQGLRAWITGQRKDQSPGTRSEIPVVQVD 757
            D   LA  L + SP +I+  A E FG+++ I+FSGAEDV L++ A    R  +VFSLDTGRL+PETYRF D+V +H+GI I+ + PD   ++ LV+ KGLFSFY DGH ECC +RK+ PL+R   G+RAW TGQR+DQSPGTRS++ V+++D
Sbjct:   29 DLPALASSLADKSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQVAVLEID 180          
BLAST of FC930448 vs. ExPASy Swiss-Prot
Match: CYSH_NEIMB (Phosphoadenosine phosphosulfate reductase OS=Neisseria meningitidis serogroup B GN=cysH1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.757e-16
Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  407 AEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFG-IRIEYMFPDAVEVQALVRSKGLFSFYE--DGHQECCRVRKVRPLRRAPQGLRAWITGQRKDQSPGTRSEIPVVQVD 757
            AED+ + +          +F+LDTG L+ ET    D + + +  +RI+   P   +    V SKG F+FY+  +  +ECCR+RK  PL RA  G  AW+TGQR++QS  TR+E+P  + D
Sbjct:   53 AEDMVITDLIAGENLNIGIFTLDTGLLHTETLNLLDRLGRAYPHLRIKRFRPVREDADRYVESKGRFAFYDSVEARRECCRIRKTEPLNRAIAGADAWLTGQRREQS-ATRTELPFAEYD 171          
BLAST of FC930448 vs. ExPASy Swiss-Prot
Match: CYSH_NEIMA (Phosphoadenosine phosphosulfate reductase OS=Neisseria meningitidis serogroup A GN=cysH PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.323e-15
Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  407 AEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFG-IRIEYMFPDAVEVQALVRSKGLFSFYE--DGHQECCRVRKVRPLRRAPQGLRAWITGQRKDQSPGTRSEIPVVQVD 757
            AED+ + +          +F+LDTG L+ ET    D +E+ +  ++I+   P   +    V SKG F+FY+  +  +ECCR+RK  PL RA  G  AW+TGQR++QS  TR+E+P  + D
Sbjct:   51 AEDMVITDLIAGENLNIGIFTLDTGLLHAETLNLLDRIERVYPHMQIKRFQPIREDALHYVESKGRFAFYDSVEARRECCRIRKTEPLDRAIAGADAWLTGQRREQS-ATRTELPFAEYD 169          
BLAST of FC930448 vs. ExPASy Swiss-Prot
Match: CYSH_RHITR (Phosphoadenosine phosphosulfate reductase (Fragment) OS=Rhizobium tropici GN=cysH PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.463e-14
Identity = 41/99 (41.41%), Postives = 54/99 (54.55%), Query Frame = 2
Query:  470 LDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE--DGHQECCRVRKVRPLRRAPQGLRAWITGQRKDQSPGTRSEIPVVQVDP 760
            L TGRL PET +  DE E  + IRI    P+  ++ A     GL  FYE  +    CC VRK++PL RA  G   W+TG R+ QS   R++ P  + DP
Sbjct:    1 LQTGRLFPETLKLIDETENQYDIRISRYEPEQADIDAYAEKYGLNGFYESVEARHACCGVRKLKPLARALSGATIWVTGLRRGQS-ANRADTPFAEYDP 98          
BLAST of FC930448 vs. ExPASy Swiss-Prot
Match: CYSH_AGRT5 (Phosphoadenosine phosphosulfate reductase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=cysH PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.559e-14
Identity = 46/120 (38.33%), Postives = 60/120 (50.00%), Query Frame = 2
Query:  404 GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE--DGHQECCRVRKVRPLRRAPQGLRAWITGQRKDQSPGTRSEIPVVQVD 757
            G ED  +         P  V +L+TGRL  ET    DE E+ FGI I    P+  ++ A     GL  FYE  +    CC VRK+ PL +A +G   WITG R+ QS G R+  P  + D
Sbjct:   52 GIEDQVITAAIGTHRLPIDVVTLETGRLFKETVDLIDETEERFGIEIRRFRPEQDDIDAYAAKYGLNGFYESVEARHACCHVRKLIPLGKALEGAAFWITGLRRGQS-GNRAATPFAEFD 170          
The following BLAST results are available for this feature:
BLAST of FC930448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
APR1_ARATH1.169e-9682.275'-adenylylsulfate reductase 1, chloroplastic OS=A... [more]
APR3_ARATH3.643e-9071.725'-adenylylsulfate reductase 3, chloroplastic OS=A... [more]
APR2_ARATH6.431e-8776.715'-adenylylsulfate reductase 2, chloroplastic OS=A... [more]
CYSH_PSEAE1.039e-4454.61Phosphoadenosine phosphosulfate reductase OS=Pseud... [more]
CYSH_PSEAB1.039e-4454.61Phosphoadenosine phosphosulfate reductase OS=Pseud... [more]
CYSH_PSEA81.039e-4454.61Phosphoadenosine phosphosulfate reductase OS=Pseud... [more]
CYSH_NEIMB7.757e-1638.33Phosphoadenosine phosphosulfate reductase OS=Neiss... [more]
CYSH_NEIMA1.323e-1538.33Phosphoadenosine phosphosulfate reductase OS=Neiss... [more]
CYSH_RHITR1.463e-1441.41Phosphoadenosine phosphosulfate reductase (Fragmen... [more]
CYSH_AGRT55.559e-1438.33Phosphoadenosine phosphosulfate reductase OS=Agrob... [more]

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Properties
Property NameValue
Genbank descriptionC34007F09EF PostHarvC1 Citrus clementina cDNA clone C34007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930448 ID=FC930448; Name=FC930448; organism=Citrus clementina; type=EST; length=765bp
GCTCCCACACAAACACAAACACAAACACAAAACTTCAATAATCATGGCCC
TGGCTGTAACTTCTTCAAATTCAATTTCAAGCTCCAGTTTTGCTCTTTCT
AGTTCTTCAAATGACATTAAAGTTTCACAAATCGGTTCTTTCCGGTTAGT
GGACCGGGCAAACGTGGCTTCCACGAGCCTCTCTCAACGACGTAGTTTAG
TAAGACCGTTGAATGCCGAGCCAAAACGAAACGATTCCGTGGTGCCTCTG
GCAGCAACTCTCGCTACCCCTGAAGTGGCGGAGAAAGTAGAAGGGGAGGA
GGATTTTGAGCAATTGGCTAAGGAGCTTGAAAATGCGTCACCTCTTGAAA
TCATGGATAGAGCTCTTGAAAAGTTTGGAAATGACATAGCGATTGCTTTC
AGTGGTGCTGAAGATGTTGCTTTGATCGAGTATGCCCATTTAACTGGTAG
ACCATTTCGGGTGTTTAGCCTGGATACTGGAAGGCTAAACCCAGAAACAT
ATAGATTCTTTGATGAAGTTGAGAAACATTTTGGCATACGTATTGAATAC
ATGTTTCCCGATGCTGTTGAAGTTCAGGCATTAGTGAGGAGCAAGGGGCT
CTTCTCTTTCTATGAGGATGGGCACCAGGAGTGCTGCCGTGTGAGGAAAG
TGAGGCCCCTTCGGAGGGCCCCTCAGGGATTGCGTGCCTGGATCACTGGC
CAAAGGAAAGATCAGTCTCCAGGTACTAGGTCTGAAATCCCTGTAGTCCA
GGTGGATCCAGTTTT
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