FC930449

Overview
NameFC930449
Unique NameFC930449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15114 contig Ccv1_Contig15114:12..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 1.372e-97
Identity = 181/193 (93.78%), Postives = 186/193 (96.37%), Query Frame = 2
Query:   80 MAALASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNHLSISASASPPYDLNTFKFDPIKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPQRQLFNAVA 658
            MAA+ASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPN+LSISASASPPYDLNTFKFDPIKESIVSRE+TRRYMTDMITYADTD    GAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL GQLFSAMVVRKPAHIFLDELGIDYDEQD+YVVIKHAALFTSTIMSKLLARP  +LFNAVA
Sbjct:    1 MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVA 193          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.005e-69
Identity = 129/171 (75.44%), Postives = 147/171 (85.96%), Query Frame = 2
Query:  146 SSFHGAPMSPSLLRLQPIKSSRPNHLSISASASPPYDLNTFKFDPIKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPQRQLFNAVA 658
            SSF+G P++PS +R+QP K+     +S+S + SPPYDL  F FDPIKESIVSRE+TRRYM DMITYADTD    GAGS+GL C YELSKNP++Q+AIIEQSVSPGGGAWL GQLFS MVVRKPAH+FLDELGI+YDEQD+YVVIKHAALFTSTIMSKLLARP  +LFNAVA
Sbjct:   20 SSFYGTPLAPSSIRVQPTKAGAKPSISMSGAPSPPYDLKAFTFDPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSSGLVC-YELSKNPSVQVAIIEQSVSPGGGAWLGGQLFSGMVVRKPAHLFLDELGIEYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVA 189          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 8.671e-68
Identity = 135/194 (69.59%), Postives = 159/194 (81.96%), Query Frame = 2
Query:   80 MAALASTAFAPSVSSTT-NKLFDSSFHGAPMSPSLLRLQPIKSSRPNHLSISASASPPYDLNTFKFDPIKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPQRQLFNAVA 658
            MAA+AST    S+SST   +LFDSSFHG+ +S + + +      +P   S+ A+ +  YDLN F FDPIKESIVSRE+TRRYMTDMITYA+TD    GAGSAGLS AYE+SKNPN+Q+AIIEQSVSPGGGAWL GQLFSAM+VRKPAH+FLDE+G+ YDEQD+YVV+KHAALFTSTIMSKLLARP  +LFNAVA
Sbjct:    1 MAAIASTL---SLSSTKPQRLFDSSFHGSAISAAPISI----GLKPRSFSVRATTAG-YDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVA 186          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.019e-61
Identity = 125/191 (65.45%), Postives = 145/191 (75.92%), Query Frame = 2
Query:  119 SSTTNKLFDSSFHGAPMSPSLLRLQPIK----------SSRPNHLSISASAS-PPYDLNTFKFDPIKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPQRQLFNAVA 658
            ++  + L  SSF G+ + P+  R  P             + P   S+S S+S PPYDL +F+F PIKESIVSRE+TRRYMTDMITYADTD    GAGSAGLSCAYELSK+P + IAI+EQSVSPGGGAWL GQLFSAMVVRKPAH+FLDELG+ YDE + YVVIKHAALFTST+MS LLARP  +LFNAVA
Sbjct:    3 TAAASSLLKSSFAGSRL-PAATRTTPASLVVATGPRGAGAGPICASMSMSSSNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKDPAVSIAIVEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVAYDEAEDYVVIKHAALFTSTVMSLLLARPNVKLFNAVA 192          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 7.861e-61
Identity = 122/189 (64.55%), Postives = 144/189 (76.19%), Query Frame = 2
Query:  119 SSTTNKLFDSSFHGAPMSPSLLRLQ---------PIKSSRPNHLSISASASPPYDLNTFKFDPIKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPQRQLFNAVA 658
            ++  + L  SSF G+ + PS  R           P     P   SIS S +PPYDL +F+F PIKESIVSRE+TRRYMTDMIT+ADTD    GAGSAGLSCAYELSK+P + +AI+EQSVSPGGGAWL GQLFSAMVVR+PAH+FLDELG+ YDE + YVV+KHAALFTST+MS+LLARP  +LFNAVA
Sbjct:    3 TTAASSLLKSSFAGSRL-PSATRTTTPSSVAVATPRAGGGPIRASIS-SPNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITHADTDVVIVGAGSAGLSCAYELSKDPTVSVAIVEQSVSPGGGAWLGGQLFSAMVVRRPAHLFLDELGVGYDEAEDYVVVKHAALFTSTVMSRLLARPNVKLFNAVA 189          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.394e-41
Identity = 84/144 (58.33%), Postives = 113/144 (78.47%), Query Frame = 2
Query:  233 ASASPPYDLN-TFKFDPIKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPQRQLFNAVA 658
            + A P Y L+ +F F PI+ES VSR +TRRY +D+  YA++D    GAGSAGL+ AY + ++ P+++IAIIE SV+PGGGAWL GQLFSAMVVRKPA +FL+E+G+ Y+++  YVV+KHAALFTST+M++ LA P  +LFNA A
Sbjct:   37 SKAYPTYSLDESFSFAPIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEASVAPGGGAWLGGQLFSAMVVRKPADLFLNEIGVPYEDEGDYVVVKHAALFTSTVMARTLALPNVKLFNATA 180          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.434e-40
Identity = 83/130 (63.85%), Postives = 102/130 (78.46%), Query Frame = 2
Query:  266 FKFDPIKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPQRQLFNA 652
            FKF PI+ES VSR +TRRY  D+  YA++D    GAGS GLS AY L K  P+++IAIIE SVSPGGGAWL GQLFSAM++RKPA  FL E+G+ Y+++ +YVV+KHAALFTSTIMSK+L  P  +LFNA
Sbjct:   44 FKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIIGAGSCGLSAAYILGKKRPDLKIAIIEASVSPGGGAWLGGQLFSAMIMRKPADAFLREVGVPYEDEGNYVVVKHAALFTSTIMSKVLQMPNIKLFNA 173          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.305e-39
Identity = 83/134 (61.94%), Postives = 106/134 (79.10%), Query Frame = 2
Query:  266 FKFDPIKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDE--QDSYVVIKHAALFTSTIMSKLLARPQRQLFNAVA 658
            FKF PI+ES VSR +TRRY  D+  YA++D    GAGS GLS AY L+K  P+++IAI+E SVSPGGGAWL GQLFSAMV+R+PA +FL+ELG+ Y+E    +YVV+KHA+LFTST+MSK+L+ P  +LFNA A
Sbjct:   48 FKFAPIRESQVSRAMTRRYFEDLDKYAESDVVIVGAGSCGLSTAYVLAKARPDLKIAIVEASVSPGGGAWLGGQLFSAMVMRRPAEVFLNELGVPYEEDANPNYVVVKHASLFTSTLMSKVLSFPNVKLFNATA 181          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.704e-39
Identity = 83/130 (63.85%), Postives = 101/130 (77.69%), Query Frame = 2
Query:  266 FKFDPIKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPQRQLFNA 652
            FKF PI+ES VSR +TRRY  D+  YA++D    GAGS GLS  Y L K  P+++IAIIE SVSPGGGAWL GQLFSAMV+RKPA  FL E+G+ Y+++ +YVV+KHAALFTSTIMSK+L  P  +LFNA
Sbjct:   48 FKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIVGAGSCGLSTRYILGKKRPDLKIAIIEASVSPGGGAWLGGQLFSAMVMRKPADAFLREVGVPYEDEGNYVVVKHAALFTSTIMSKVLQLPNCKLFNA 177          
BLAST of FC930449 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.443e-38
Identity = 78/134 (58.21%), Postives = 103/134 (76.87%), Query Frame = 2
Query:  254 DLNTFKFDPIKESIVSREVTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPQRQLFNA 652
            D + FKF PI+ES VSR +T RY  D+  +A +D    GAGS+GLS AY ++KN P++++ IIE SV+PGGG+WL GQLFSAMV+RKPAH+FL EL I Y+++  YVV+KHAALF ST++SK+L  P  +LFNA
Sbjct:   34 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNA 167          
The following BLAST results are available for this feature:
BLAST of FC930449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
THI4_CITSI1.372e-9793.78Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL6.005e-6975.44Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH8.671e-6869.59Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE6.019e-6165.45Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE7.861e-6164.55Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI2_SCHPO1.394e-4158.33Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_FUSOX3.434e-4063.85Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR1.305e-3961.94Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_FUSSH1.704e-3963.85Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_YEAST1.443e-3858.21Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34007F10EF PostHarvC1 Citrus clementina cDNA clone C34007F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930449 ID=FC930449; Name=FC930449; organism=Citrus clementina; type=EST; length=659bp
TCATCACTGCTGCAAATCAAATTACTTCTCATTATCAAACTTCTAAGCAG
CAGGGGAAGGAGGGGTAAAAAAAAAAAACATGGCAGCCTTGGCTTCTACA
GCTTTCGCTCCTTCAGTTTCGTCTACCACCAATAAGCTCTTTGACTCATC
CTTTCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCATCA
AATCTTCTCGTCCCAACCACTTGTCCATTTCTGCTTCTGCTTCTCCTCCT
TATGACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTC
TCGTGAAGTGACGCGCAGGTACATGACGGACATGATCACTTATGCTGACA
CTGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTAT
GAGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCTGT
TAGCCCCGGCGGTGGCGCGTGGCTCAGTGGACAGCTCTTCTCTGCCATGG
TTGTGCGCAAACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGACTAC
GATGAGCAAGACAGCTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTC
CACTATAATGAGCAAGCTCCTGGCCCGCCCCCAACGTCAGCTCTTTAATG
CAGTGGCAG
back to top