FC930452

Overview
NameFC930452
Unique NameFC930452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930452_ssr32 microsatellite FC930452_ssr32:32..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15077 contig Ccv1_Contig15077:1..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: PMGI_RICCO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ricinus communis PE=1 SV=2)

HSP 1 Score: 308.916 bits (790), Expect = 1.409e-83
Identity = 143/177 (80.79%), Postives = 164/177 (92.66%), Query Frame = 1
Query:  109 WKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            WKL +HP+L +   +A+VVLDGWGE KPD+YNCIHVA+TPTMDSFKK+APERWRL++AHG+AVGLPTEDDMGNSEVGHNALGAGRI+AQGAKLVDLALASGKIY+ EGF Y+K  F+ GTLHLIGLLSDGGVHSRLDQLQLLLKGA+E GAKRIR+H+LTDGRDV+DG+SVGF ET+
Sbjct:    5 WKLADHPKLPKGKTIAMVVLDGWGEAKPDQYNCIHVAETPTMDSFKKTAPERWRLIKAHGTAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYEGEGFKYVKECFDKGTLHLIGLLSDGGVHSRLDQLQLLLKGAAEHGAKRIRVHVLTDGRDVIDGTSVGFAETL 181          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: PMGI_MESCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 2.657e-82
Identity = 145/178 (81.46%), Postives = 162/178 (91.01%), Query Frame = 1
Query:  106 NWKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            +WKL +HP+L +   +A+VVLDGWGE   ++YNCIHVA+TPTMDS K+ APE+WRL+RAHG AVGLPTEDDMGNSEVGHNALGAGRI+AQGAKLVDLAL SGKIY  EGFNYIK SFET TLHLIGLLSDGGVHSRLDQLQLLLKG++ERGAKRIR+HILTDGRDVLDGSSVGFVET+
Sbjct:    7 SWKLADHPKLPKGKTLAMVVLDGWGEASANQYNCIHVAETPTMDSLKQGAPEKWRLIRAHGKAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDLALESGKIYDGEGFNYIKESFETNTLHLIGLLSDGGVHSRLDQLQLLLKGSAERGAKRIRVHILTDGRDVLDGSSVGFVETL 184          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: PMGI_MAIZE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.010e-81
Identity = 144/178 (80.90%), Postives = 160/178 (89.89%), Query Frame = 1
Query:  106 NWKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            +W L +HP+L +   VAVVVLDGWGE  PD+YNCIHVA TP MDS K  APE+WRLV+AHG+AVGLP++DDMGNSEVGHNALGAGRIFAQGAKLVD ALASGKIY  +GFNYIK SFE+GTLHLIGLLSDGGVHSRLDQLQLLLKG SERGAK+IR+HILTDGRDVLDGSS+GFVET+
Sbjct:    7 SWTLPDHPKLPKGKSVAVVVLDGWGEANPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMGNSEVGHNALGAGRIFAQGAKLVDQALASGKIYDGDGFNYIKESFESGTLHLIGLLSDGGVHSRLDQLQLLLKGVSERGAKKIRVHILTDGRDVLDGSSIGFVETL 184          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: PMGI_TOBAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 9.449e-80
Identity = 140/179 (78.21%), Postives = 160/179 (89.39%), Query Frame = 1
Query:  103 DNWKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            D WKLK+HP+L +   VAV+VLDGWGE KP+++N IHVA+TP M S K  APE+WRL++AHG+AVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIY+ EGF Y+K  FE GTLHLIGLLSDGGVHSRLDQ+QLLLKGA++ GAKRIR+H LTDGRDVLDGSSVGF+ET+
Sbjct:    6 DAWKLKDHPKLPKGKTVAVIVLDGWGEAKPNEFNAIHVAETPVMYSLKNGAPEKWRLIKAHGNAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYEGEGFKYVKECFEKGTLHLIGLLSDGGVHSRLDQVQLLLKGAAKHGAKRIRVHALTDGRDVLDGSSVGFMETL 184          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: PMG2_ARATH (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Arabidopsis thaliana GN=At3g08590 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.105e-79
Identity = 138/178 (77.53%), Postives = 157/178 (88.20%), Query Frame = 1
Query:  106 NWKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            NWKL +HP+L +   + ++VLDGWGE  PD+YNCIH A TP MDS K   P+ WRL++AHG+AVGLP+EDDMGNSEVGHNALGAGRI+AQGAKLVDLALASGKIY+DEGF YI  SFE GT+HLIGLLSDGGVHSRLDQ+QLLLKG +ERGAKRIR+HILTDGRDVLDGSSVGFVET+
Sbjct:    8 NWKLADHPKLPKGKTIGLIVLDGWGESDPDQYNCIHKAPTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYEDEGFKYISQSFEKGTVHLIGLLSDGGVHSRLDQVQLLLKGFAERGAKRIRVHILTDGRDVLDGSSVGFVETL 185          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: PMG1_ARATH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Arabidopsis thaliana GN=PGM1 PE=2 SV=3)

HSP 1 Score: 289.271 bits (739), Expect = 1.155e-77
Identity = 135/177 (76.27%), Postives = 155/177 (87.57%), Query Frame = 1
Query:  109 WKLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            WKL +HP+L +   +AV+VLDGWGE  PD+YNCIH A TP MDS K  AP+ W L++AHG+AVGLP+EDDMGNSEVGHNALGAGRIFAQGAKL D ALASGKI++ EGF Y+  SFET TLHL+GLLSDGGVHSRLDQLQLL+KG++ERGAKRIR+HILTDGRDVLDGSSVGFVET+
Sbjct:    7 WKLDDHPKLPKGKTIAVIVLDGWGESAPDQYNCIHNAPTPAMDSLKHGAPDTWTLIKAHGTAVGLPSEDDMGNSEVGHNALGAGRIFAQGAKLCDQALASGKIFEGEGFKYVSESFETNTLHLVGLLSDGGVHSRLDQLQLLIKGSAERGAKRIRVHILTDGRDVLDGSSVGFVETL 183          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: PMGI_PRUDU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Fragment) OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.974e-50
Identity = 98/113 (86.73%), Postives = 104/113 (92.04%), Query Frame = 1
Query:  301 LPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            LPTEDDMGNSEVGHNALGAGRIFAQGAKLVD AL +GK+Y+ EGF YIK SF T TLHLIGLLSDGGVHSRLDQL LL+KGASERGAKRIR+HILTDGRDVLDGSSVGF ET+
Sbjct:    1 LPTEDDMGNSEVGHNALGAGRIFAQGAKLVDSALETGKLYEGEGFKYIKESFPTNTLHLIGLLSDGGVHSRLDQLLLLVKGASERGAKRIRVHILTDGRDVLDGSSVGFAETL 113          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIN (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans GN=gpmI PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.968e-30
Identity = 73/168 (43.45%), Postives = 102/168 (60.71%), Query Frame = 1
Query:  139 RNNIVAVVVLDGWGEYK--PDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFV 630
            R+  V +++LDG G     P+  N I  A  P ++      P     ++AHG AVG+P++DDMGNSEVGHN LG+GRIF QGAKLV  ++ASG I+  + +  +         TLHL+GL SDG VHS +D  + L+  A      +IRLHIL DGRDV + S++ ++
Sbjct:   14 RSRKVLLIILDGVGYSPKGPESGNAIAGAKLPFLNRVWNQFPTLH--IQAHGKAVGMPSDDDMGNSEVGHNVLGSGRIFDQGAKLVSNSIASGDIFNGQAWKEVIGNSKKNNSTLHLLGLFSDGNVHSHIDHTKALISQAILEKVPKIRLHILLDGRDVPEKSALDYL 179          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gpmI PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.968e-30
Identity = 73/168 (43.45%), Postives = 102/168 (60.71%), Query Frame = 1
Query:  139 RNNIVAVVVLDGWGEYK--PDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFV 630
            R+  V +++LDG G     P+  N I  A  P ++      P     ++AHG AVG+P++DDMGNSEVGHN LG+GRIF QGAKLV  ++ASG I+  + +  +         TLHL+GL SDG VHS +D  + L+  A      +IRLHIL DGRDV + S++ ++
Sbjct:   14 RSRKVLLIILDGVGYSPKGPESGNAIAGAKLPFLNRVWNQFPTLH--IQAHGKAVGMPSDDDMGNSEVGHNVLGSGRIFDQGAKLVSNSIASGDIFNGQAWKEVIGNSKKNNSTLHLLGLFSDGNVHSHIDHTKALISQAILEKVPKIRLHILLDGRDVPEKSALDYL 179          
BLAST of FC930452 vs. ExPASy Swiss-Prot
Match: GPMI_PROMT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain NATL2A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.583e-26
Identity = 65/165 (39.39%), Postives = 94/165 (56.97%), Query Frame = 1
Query:  151 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETI 639
            V + +LDGWG  +  ++N +  A TP +D+   + P    L+ A G+ VGLP E  MGNSEVGH  +GAGRI  Q    +   +   K+  +   N    S + G  TLH++GL SDGGVHS +  L  L++ A+ +G K + LH+ TDGRD    S+  ++ TI
Sbjct:   18 VVLAILDGWGYREEIEHNAVRQASTPVIDALWHAYPHT--LIEASGADVGLPDEQ-MGNSEVGHLTIGAGRIIQQELVRISNTVKENKLIANPALNQFSQSLKKGGGTLHIMGLCSDGGVHSHIKHLCGLIEWAASKGLKNVSLHLFTDGRDTSAKSATKYINTI 179          
The following BLAST results are available for this feature:
BLAST of FC930452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
PMGI_RICCO1.409e-8380.792,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_MESCR2.657e-8281.462,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_MAIZE1.010e-8180.902,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_TOBAC9.449e-8078.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMG2_ARATH2.105e-7977.53Probable 2,3-bisphosphoglycerate-independent phosp... [more]
PMG1_ARATH1.155e-7776.272,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_PRUDU5.974e-5086.732,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEPIN8.968e-3043.45Probable 2,3-bisphosphoglycerate-independent phosp... [more]
GPMI_LEPIC8.968e-3043.452,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMT1.583e-2639.392,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionC34007G01EF PostHarvC1 Citrus clementina cDNA clone C34007G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930452 ID=FC930452; Name=FC930452; organism=Citrus clementina; type=EST; length=639bp
GGTCCTGGTATTCTCTCTCTGTGTATATCACTTGTTTGTTTGTTAGCTTT
CTACGGACGCGCGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGA
TGGATAACTGGAAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATT
GTAGCCGTTGTGGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTA
TAACTGCATCCATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGT
CTGCACCTGAGAGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGG
CTTCCAACTGAAGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACT
CGGTGCTGGTCGCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTC
TGGCCTCTGGGAAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCG
TCTTTTGAAACCGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTGG
AGTACACTCTAGGCTTGATCAACTTCAGTTGTTGCTAAAAGGAGCTAGTG
AGCGTGGTGCTAAAAGAATTCGTCTTCATATTCTTACTGACGGGCGTGAT
GTTTTGGATGGTTCAAGCGTAGGATTCGTAGAAACTATT
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