FC930456

Overview
NameFC930456
Unique NameFC930456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930456_ssr223 microsatellite FC930456_ssr223:223..243. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930456_ssr154 microsatellite FC930456_ssr154:154..177. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15155 contig Ccv1_Contig15155:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930456 vs. ExPASy Swiss-Prot
Match: CRR12_ARATH (Cysteine-rich repeat secretory protein 12 OS=Arabidopsis thaliana GN=CRRSP12 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.777e-48
Identity = 92/147 (62.59%), Postives = 116/147 (78.91%), Query Frame = 3
Query:  288 ETFVFGGCSQQKYTPGSAYENSVNSMLTSLVNSAMFSSYNNFTIQG----QQTLYGLFQCRGDLSTA--DCGRCVAHAVSQLGTLCLDSCGGVLQLDGCFVKYDNISFLGVEDKTVVV*KCGPLIGYDSDSSTRRDAVLGYLGSSDG 710
            +TF++GGCSQ+KY PGS YE++VNS+LTS V+SA   +YNNFT  G      ++YGL+QCRGDLS+   DC RCVA AVS+LG+LC  + GG LQL+GCFVKYDN +FLGVEDKTVVV +CGP +GY+SD  TRRD+V+G L +S G
Sbjct:   25 DTFIYGGCSQEKYFPGSPYESNVNSLLTSFVSSASLYTYNNFTTNGISGDSSSVYGLYQCRGDLSSGSGDCARCVARAVSRLGSLCAMASGGALQLEGCFVKYDNTTFLGVEDKTVVVRRCGPPVGYNSDEMTRRDSVVGSLAASSG 171          
BLAST of FC930456 vs. ExPASy Swiss-Prot
Match: CRR60_ARATH (Cysteine-rich repeat secretory protein 60 OS=Arabidopsis thaliana GN=CRRSP60 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.321e-48
Identity = 95/144 (65.97%), Postives = 112/144 (77.78%), Query Frame = 3
Query:  288 ETFVFGGCSQQKYTPGSAYENSVNSMLTSLVNSAMFSSYNNFTIQGQQ---TLYGLFQCRGDLSTADCGRCVAHAVSQLGTLCLDSCGGVLQLDGCFVKYDNISFLGVEDKTVVV*KCGPLIGYDSDSSTRRDAVLGYLGSSDG 710
            +TFVFGGCSQQK++P SAYE+++NS+LTSLVNSA +SSYNNFTI G     T  GLFQCRGDLS  DC  CVA AVSQ+G LC  +CGG LQL GC++KYDNISFLG EDKTVV+ KCG   GY++D  +RRDAVL  L +  G
Sbjct:   35 DTFVFGGCSQQKFSPASAYESNLNSLLTSLVNSATYSSYNNFTIMGSSSSDTARGLFQCRGDLSMPDCATCVARAVSQVGPLCPFTCGGALQLAGCYIKYDNISFLGQEDKTVVLKKCGSSEGYNTDGISRRDAVLTELVNGGG 178          
BLAST of FC930456 vs. ExPASy Swiss-Prot
Match: CRR2_ARATH (Cysteine-rich repeat secretory protein 2 OS=Arabidopsis thaliana GN=CRRSP2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.045e-32
Identity = 65/148 (43.92%), Postives = 98/148 (66.22%), Query Frame = 3
Query:  288 ETFVFGGCSQQKYTPGSAYENSVNSMLTSLVNSAMFSSYNNFTI-----QGQQTLYGLFQCRGDLSTADCGRCVAHAVSQLGTLCLDSCGGVLQLDGCFVKYDNISFLGVEDKTVVV*KCG-PLIGYDSDSSTRRDAVLGYLGSSDGS 713
            + +++  CS  K++P S YE ++NS+L+S V S   + Y NFT+     +   T+YG++QCRGDL    C  CV+ AV+Q+G LC +S  G LQ++ C ++YDN SFLGV+DKT+++ KCG P+   D D+ T+   V+G LG+ DGS
Sbjct:   29 DNYIYAVCSPAKFSPSSGYETNLNSLLSSFVTSTAQTRYANFTVPTGKPEPTVTVYGIYQCRGDLDPTACSTCVSSAVAQVGALCSNSYSGFLQMENCLIRYDNKSFLGVQDKTLILNKCGQPMEFNDQDALTKASDVIGSLGTGDGS 176          
BLAST of FC930456 vs. ExPASy Swiss-Prot
Match: CRR15_ARATH (Cysteine-rich repeat secretory protein 15 OS=Arabidopsis thaliana GN=CRRSP15 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 54/145 (37.24%), Postives = 88/145 (60.69%), Query Frame = 3
Query:  294 FVFGGCSQQKYTPGSAYENSVNSMLTSLVNSAMFSSYNNFTI-------QGQQTLYGLFQCRGDLSTADCGRCVAHAVSQLGTLCLDSCGGVLQLDGCFVKYDNISFLGVEDKTVVV*KC-GPLIGYDSDSSTRRDAVLGYLGSS 704
            F++GGCS +KYTP + +E++ ++ L+S+V S+  +S+N+F +            ++GL+QCR DL ++DC +C+  +V Q+  +C  S G  LQL+GCF++Y+   FLG  D ++   KC    +  D D   RRD VL  L S+
Sbjct:   29 FIYGGCSPEKYTPNTPFESNRDTFLSSVVTSSSDASFNSFAVGNDSSSSSSSSAVFGLYQCRDDLRSSDCSKCIQTSVDQITLICPYSYGASLQLEGCFLRYETNDFLGKPDTSLRYKKCSSKSVENDYDFFKRRDDVLSDLEST 173          
BLAST of FC930456 vs. ExPASy Swiss-Prot
Match: CRR7_ARATH (Putative cysteine-rich repeat secretory protein 7 OS=Arabidopsis thaliana GN=CRRSP7 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 3
Query:  309 CSQQKYTPGSAYENSVNSMLTSLVNSAMFSSYNNFTIQ-GQQTLYGLFQCRGDLSTADCGRCVAHAVSQLGTLCLDSCGGVLQLDGCFVKYDNISFLG-VEDKTVVV 623
            CS   +T  S+YE + N +LT+L  ++    Y N TI     T+YG+F CRGD++T  C  CV  A  ++ T C  +    +  D C V+Y N+SF    E K V+V
Sbjct:   33 CSVDSFTQTSSYETNRNILLTTLSLTSSLVHYLNATIGLSPDTVYGMFLCRGDINTTSCSDCVQTAAIEIATNCTLNKRAFIYYDECMVRYSNVSFFSEFESKPVIV 139          
BLAST of FC930456 vs. ExPASy Swiss-Prot
Match: CRR3_ARATH (Cysteine-rich repeat secretory protein 3 OS=Arabidopsis thaliana GN=CRRSP3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 42/137 (30.66%), Postives = 66/137 (48.18%), Query Frame = 3
Query:  291 TFVFGGCSQQKYT-PGSAYENSVNSMLTSLVN-SAMFSSYNNFTIQGQQTLYGLFQCRGDLSTADCGRCVAHAVSQLGTLCLDSCGGVLQLDGCFVKYDNISFLGVEDKTVVV*KCGPLIGYDSDSSTRRDAVLGYL 695
            T ++ GC++Q+++ P   Y  ++++M  SLV+ S     Y   T     T+ GLFQCRGDLS  DC  CV+        LC  +    +QL GC++ Y+   F  +    ++   CG      +    RRD   G +
Sbjct:   34 TLIYKGCARQQFSDPSGLYSQALSAMFGSLVSQSTKTRFYKTTTGTSTTTITGLFQCRGDLSNHDCYNCVSRLPVLSDKLCGKTIASRVQLSGCYLLYEVSGFSQISGMEMLFKTCGKNNIAGTGFEERRDTAFGVM 170          
BLAST of FC930456 vs. ExPASy Swiss-Prot
Match: CRR9_ARATH (Cysteine-rich repeat secretory protein 9 OS=Arabidopsis thaliana GN=CRRSP9 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  297 VFGGCSQ-QKYTPGSAYENSVNSMLTSLVNSAMFSSYNNFTIQ-GQQTLYGLFQCRGDLSTADCGRCVAHAVSQLGTLCLDSCGGVLQLDGCFVKYDNISF 593
            +F  C+    +T  S+YE + +++L SL  S+    Y+N T      T++G+F CRGD++TA C  CV  A +++ + C  +   V+  D C V+Y N+SF
Sbjct:   32 IFTVCNPTNNFTQTSSYETNRDTLLASLRESSSLGHYSNATEGLSPDTVHGMFLCRGDITTASCVDCVQTATTEIASNCTLNKRAVIYYDECMVRYSNVSF 132          
BLAST of FC930456 vs. ExPASy Swiss-Prot
Match: CRR11_ARATH (Cysteine-rich repeat secretory protein 11 OS=Arabidopsis thaliana GN=CRRSP11 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 39/136 (28.68%), Postives = 65/136 (47.79%), Query Frame = 3
Query:  297 VFGGCSQQKYT-PGSAYENSVNSMLTSLVNSAMFSSYNNFTI--QGQQTLYGLFQCRGDLSTADCGRCVAHAVSQLGTLCLDSCGGVLQLDGCFVKYDNISFLGVEDKTVVV*KCGPLIGYDSDSSTRRDAVLGYL 695
            ++ GC++Q+ + P   Y  ++++M   LV  +  + +   T     Q ++ GLFQCRGDLS  DC  CV+      G LC  +    +QL GC++ Y+   F  +    ++   CG      +    RRD   G +
Sbjct:   37 IYKGCARQRLSDPSGLYSQALSAMYGLLVTQSTKTRFYKTTTGTTSQTSVTGLFQCRGDLSNNDCYNCVSRLPVLSGKLCGKTIAARVQLSGCYLLYEISGFAQISGMELLFKTCGKNNVAGTGFEQRRDTAFGVM 172          
The following BLAST results are available for this feature:
BLAST of FC930456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CRR12_ARATH1.777e-4862.59Cysteine-rich repeat secretory protein 12 OS=Arabi... [more]
CRR60_ARATH2.321e-4865.97Cysteine-rich repeat secretory protein 60 OS=Arabi... [more]
CRR2_ARATH3.045e-3243.92Cysteine-rich repeat secretory protein 2 OS=Arabid... [more]
CRR15_ARATH3.375e-2337.24Cysteine-rich repeat secretory protein 15 OS=Arabi... [more]
CRR7_ARATH7.053e-1337.38Putative cysteine-rich repeat secretory protein 7 ... [more]
CRR3_ARATH4.571e-1230.66Cysteine-rich repeat secretory protein 3 OS=Arabid... [more]
CRR9_ARATH6.601e-1134.65Cysteine-rich repeat secretory protein 9 OS=Arabid... [more]
CRR11_ARATH8.621e-1128.68Cysteine-rich repeat secretory protein 11 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC34007G05EF PostHarvC1 Citrus clementina cDNA clone C34007G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930456 ID=FC930456; Name=FC930456; organism=Citrus clementina; type=EST; length=714bp
GAAATCAAGTAACACACTCCCTTTACGTAAATTCTCCTTAAAGCAAAGAC
CCTCTAGCTCTGCAAAAAGCTTTTCTATTCGCAATCACAAATATAAAGTT
TCAAGCAAATTAAGCCATCACTTTCTTCATCTTCATCATATATCATCAAA
GGTCTCACTCACTCACTCACTCACTCATCATCTTCTTCACAGACATGGCT
TCAACCCAAACACCTTCGCTGATTCTTCTTCTTCTTCTTCTTCTCACTAC
TCTCTCAATTCTCACAACCCCTTCATCTTCATCCACCGAGACCTTCGTTT
TCGGCGGCTGCTCCCAGCAAAAGTACACTCCCGGCTCAGCTTACGAAAAC
AGCGTCAACTCGATGCTCACTTCCCTTGTCAACTCGGCCATGTTCAGTTC
CTACAACAACTTCACCATCCAGGGCCAGCAAACCCTCTACGGCCTCTTCC
AATGCCGTGGTGACCTCTCCACTGCCGACTGCGGCCGCTGCGTCGCCCAC
GCCGTGAGTCAACTCGGCACCCTTTGCCTCGACTCCTGCGGTGGCGTCTT
GCAGCTCGATGGCTGCTTCGTTAAATATGATAATATTTCATTTCTGGGCG
TCGAGGACAAGACTGTGGTTGTTTAAAAATGTGGGCCGTTGATCGGGTAT
GACTCCGATTCGTCGACCCGGCGTGATGCTGTTTTGGGTTATTTAGGGTC
GAGTGATGGGTCCT
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