FC930464

Overview
NameFC930464
Unique NameFC930464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15157 contig Ccv1_Contig15157:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930464 vs. ExPASy Swiss-Prot
Match: PIP_ARATH (Proline iminopeptidase OS=Arabidopsis thaliana GN=PIP PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 3.638e-38
Identity = 79/130 (60.77%), Postives = 94/130 (72.31%), Query Frame = 1
Query:  292 FLPSSHQNFTLA--GRKDLVIRAQNFGVKSEPKLIDMMESGKELPELNTN-LYPYVEPYSTGILKVSDIHTIYWE*SGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQ 672
            F PS+H N  L   G++ + +     G KSE    D ME  +    +N   LY  +EPYS+G LKVSD+HT+YWE SG P GHPVVFLHGGPGGGT PSNRRFFDP+FYRI+LFDQRGAGKSTPHACL++
Sbjct:   18 FFPSNHNNLNLLFPGQRKIQVSC---GGKSEVLKSDTMEPHEAETFVNKRTLYAPIEPYSSGNLKVSDVHTLYWEQSGKPDGHPVVFLHGGPGGGTAPSNRRFFDPEFYRIVLFDQRGAGKSTPHACLEE 144          
BLAST of FC930464 vs. ExPASy Swiss-Prot
Match: PIP_PLEBO (Probable proline iminopeptidase OS=Plectonema boryanum GN=pip PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.026e-28
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 1
Query:  436 LYPYVEPYSTGILKVSDIHTIYWE*SGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHA 660
            LYP + PY +G+L VS +HTIY+E SGNP G PVVFLHGGPGGGT P+ R++FDP  +RIILFDQRGAGKSTPHA
Sbjct:    4 LYPAIAPYQSGMLPVSALHTIYYEQSGNPNGKPVVFLHGGPGGGTIPTYRQYFDPSKWRIILFDQRGAGKSTPHA 78          

HSP 2 Score: 25.409 bits (54), Expect = 4.026e-28
Identity = 10/19 (52.63%), Postives = 11/19 (57.89%), Query Frame = 3
Query:  642 KKYPSCLLGSNTTWDLIDD 698
            K  P   L  NTTWDL+ D
Sbjct:   73 KSTPHAELRENTTWDLVSD 91          
BLAST of FC930464 vs. ExPASy Swiss-Prot
Match: PIP_XANCI (Proline iminopeptidase OS=Xanthomonas campestris pv. citri GN=pip PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.528e-23
Identity = 50/77 (64.94%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  436 LYPYVEPYSTGILKVSDIHTIYWE*SGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACL 666
            LYP + PY  G LKV D HT+Y+E  GNP G PVV LHGGPGGG     RRF DP  YRI+LFDQRG+G+STPHA L
Sbjct:    4 LYPEITPYQQGSLKVDDRHTLYFEQCGNPHGKPVVMLHGGPGGGCNDKMRRFHDPAKYRIVLFDQRGSGRSTPHADL 80          

HSP 2 Score: 22.7126 bits (47), Expect = 1.528e-23
Identity = 9/16 (56.25%), Postives = 10/16 (62.50%), Query Frame = 3
Query:  651 PSCLLGSNTTWDLIDD 698
            P   L  NTTWDL+ D
Sbjct:   76 PHADLVDNTTWDLVAD 91          
BLAST of FC930464 vs. ExPASy Swiss-Prot
Match: PIP_XYLFA (Proline iminopeptidase OS=Xylella fastidiosa GN=pip PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.366e-23
Identity = 50/77 (64.94%), Postives = 55/77 (71.43%), Query Frame = 1
Query:  436 LYPYVEPYSTGILKVSDIHTIYWE*SGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACL 666
            LYP V P+  GIL V D H +Y+E  GNP G PVV LHGGPG G     RRF DPD YRI+LFDQRGAG+STPHA L
Sbjct:    4 LYPEVTPFEHGILCVDDNHRLYYEQCGNPHGKPVVILHGGPGSGCNDKMRRFHDPDKYRIVLFDQRGAGRSTPHANL 80          

HSP 2 Score: 23.8682 bits (50), Expect = 3.366e-23
Identity = 9/16 (56.25%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  651 PSCLLGSNTTWDLIDD 698
            P   L +NTTWDL+ D
Sbjct:   76 PHANLTNNTTWDLVAD 91          
BLAST of FC930464 vs. ExPASy Swiss-Prot
Match: PIP_XYLFT (Proline iminopeptidase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=pip PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.380e-23
Identity = 49/77 (63.64%), Postives = 55/77 (71.43%), Query Frame = 1
Query:  436 LYPYVEPYSTGILKVSDIHTIYWE*SGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACL 666
            LYP V P+  G+L V D H +Y+E  GNP G PVV LHGGPGGG     RRF DPD YRI+LFDQRGAG+S PHA L
Sbjct:    4 LYPEVTPFDHGMLCVDDSHRLYYEQCGNPHGKPVVILHGGPGGGCNDKMRRFHDPDKYRIVLFDQRGAGRSMPHANL 80          

HSP 2 Score: 24.2534 bits (51), Expect = 4.380e-23
Identity = 9/19 (47.37%), Postives = 12/19 (63.16%), Query Frame = 3
Query:  642 KKYPSCLLGSNTTWDLIDD 698
            +  P   L +NTTWDL+ D
Sbjct:   73 RSMPHANLTNNTTWDLVAD 91          
BLAST of FC930464 vs. ExPASy Swiss-Prot
Match: PIP_SERMA (Proline iminopeptidase OS=Serratia marcescens GN=pip PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.639e-23
Identity = 46/78 (58.97%), Postives = 57/78 (73.08%), Query Frame = 1
Query:  436 LYPYVEPYSTGILKVSDIHTIYWE*SGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLD 669
            LYP +  Y +G L   D H IYWE SGNP G P VF+HGGPGGG +P +R+ FDP+ Y+++LFDQRG G+S PHA LD
Sbjct:    7 LYPPLAAYDSGWLDTGDGHRIYWELSGNPNGKPAVFIHGGPGGGISPHHRQLFDPERYKVLLFDQRGCGRSRPHASLD 84          
BLAST of FC930464 vs. ExPASy Swiss-Prot
Match: PIP_NEIMB (Proline iminopeptidase OS=Neisseria meningitidis serogroup B GN=pip PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = 1
Query:  436 LYPYVEPYSTGILKVSDIHTIYWE*SGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLD 669
            +Y   +P+ +G L+VS+IH IYWE SGNP G PV+FLHGGPG G +P  R FF+PD +RI++ DQRG G+S P+AC +
Sbjct:    1 MYEIKQPFHSGYLQVSEIHQIYWEESGNPDGVPVIFLHGGPGAGASPECRGFFNPDVFRIVIIDQRGCGRSRPYACAE 78          
BLAST of FC930464 vs. ExPASy Swiss-Prot
Match: PIP_NEIMA (Proline iminopeptidase OS=Neisseria meningitidis serogroup A GN=pip PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = 1
Query:  436 LYPYVEPYSTGILKVSDIHTIYWE*SGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLD 669
            +Y   +P+ +G L+VS+IH IYWE SGNP G PV+FLHGGPG G +P  R FF+PD +RI++ DQRG G+S P+AC +
Sbjct:    1 MYEIKQPFHSGYLQVSEIHQIYWEESGNPDGVPVIFLHGGPGAGASPECRGFFNPDVFRIVIIDQRGCGRSRPYACAE 78          
BLAST of FC930464 vs. ExPASy Swiss-Prot
Match: PIP_NEIGO (Proline iminopeptidase OS=Neisseria gonorrhoeae GN=pip PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = 1
Query:  436 LYPYVEPYSTGILKVSDIHTIYWE*SGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLD 669
            +Y   +P+ +G L+VS+IH IYWE SGNP G PV+FLHGGPG G +P  R FF+PD +RI++ DQRG G+S P+AC +
Sbjct:    1 MYEIKQPFHSGYLQVSEIHQIYWEESGNPDGVPVIFLHGGPGAGASPECRGFFNPDVFRIVIIDQRGCGRSHPYACAE 78          
BLAST of FC930464 vs. ExPASy Swiss-Prot
Match: PIP_STRCO (Probable proline iminopeptidase OS=Streptomyces coelicolor GN=SCO1989 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.536e-20
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  433 NLYPYVEPYSTGILKVSDIHTIYWE*SGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQTPHGIS 690
            +LYP +EPY  G+L V D + +YWE  GNP G P V LHGGPG   +P  RR+FDP  YRI+L DQRGAG+S P A    T   ++
Sbjct:    2 SLYPEIEPYDHGMLDVGDGNHVYWETCGNPHGKPAVVLHGGPGSRASPGLRRYFDPAAYRIVLLDQRGAGRSLPRASAPDTDMSVN 87          
The following BLAST results are available for this feature:
BLAST of FC930464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PIP_ARATH3.638e-3860.77Proline iminopeptidase OS=Arabidopsis thaliana GN=... [more]
PIP_PLEBO4.026e-2872.00Probable proline iminopeptidase OS=Plectonema bory... [more]
PIP_XANCI1.528e-2364.94Proline iminopeptidase OS=Xanthomonas campestris p... [more]
PIP_XYLFA3.366e-2364.94Proline iminopeptidase OS=Xylella fastidiosa GN=pi... [more]
PIP_XYLFT4.380e-2363.64Proline iminopeptidase OS=Xylella fastidiosa (stra... [more]
PIP_SERMA5.639e-2358.97Proline iminopeptidase OS=Serratia marcescens GN=p... [more]
PIP_NEIMB1.256e-2256.41Proline iminopeptidase OS=Neisseria meningitidis s... [more]
PIP_NEIMA1.256e-2256.41Proline iminopeptidase OS=Neisseria meningitidis s... [more]
PIP_NEIGO1.641e-2256.41Proline iminopeptidase OS=Neisseria gonorrhoeae GN... [more]
PIP_STRCO1.536e-2052.33Probable proline iminopeptidase OS=Streptomyces co... [more]

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Properties
Property NameValue
Genbank descriptionC34007H01EF PostHarvC1 Citrus clementina cDNA clone C34007H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930464 ID=FC930464; Name=FC930464; organism=Citrus clementina; type=EST; length=700bp
ACAGCAAAGATATAGTGAATTGGGTATACAGCAAAATGGACAGCAGAGAT
AGCATGCTTACTGTTGTGGACCCAAACATCTCAGAGATTCTAAAGGAAGA
TGCTCTCAAAGTTTTGAGAATTGCAATTCACTGCACAAACAAACTCCCAG
CTTTTAGACCATCAATGAGGGTTGTAGTCCAAATGCTAGAAGAAGCTGAG
CCTTGTTCAGTCACCAACATTGTTGTTAAGAAAGTTGGAGAAAGTAGTCC
AAGTTTTTCAAGGCACTACAACTCAACATAAATTTGAAGGGTTCCTCCCT
TCATCCCATCAGAATTTCACTCTCGCAGGGAGGAAGGATTTAGTAATACG
TGCACAAAATTTTGGGGTTAAGAGTGAGCCAAAGCTCATTGATATGATGG
AATCAGGAAAGGAATTACCAGAATTGAATACGAATCTTTATCCTTATGTA
GAGCCATACAGTACAGGCATTTTGAAGGTTTCTGATATTCACACAATCTA
CTGGGAGTAGTCTGGAAACCCTACCGGGCATCCTGTTGTGTTTCTTCATG
GAGGTCCAGGAGGAGGCACTACACCAAGTAATCGAAGATTCTTTGATCCC
GATTTTTACCGTATCATTTTATTTGATCAGCGAGGTGCAGGAAAAAGTAC
CCCTCATGCTTGCTTGGATCAAACACCACATGGGATCTCATTGATGACAT
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