FC930531

Overview
NameFC930531
Unique NameFC930531
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15171 contig Ccv1_Contig15171:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSKP_CAPAN (Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.631e-35
Identity = 68/121 (56.20%), Postives = 92/121 (76.03%), Query Frame = 1
Query:  343 PKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            P ++   NI  DV+QLIG TP+V+LN + +GC A IA K E+ +P  S+KDR   +M+ DAE K LISPGKT ++EPTSGN GI +AF+AA +GYK++LTMP+  SLERRV ++AFGA+L+
Sbjct:   59 PTEIEGLNIAEDVTQLIGNTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMISDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELV 179          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSKP_SPIOL (Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.511e-34
Identity = 73/141 (51.77%), Postives = 99/141 (70.21%), Query Frame = 1
Query:  283 VSSQPAPVDSSSFAQRLRDLPKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            VSS P    + S +      P  +   NI  DVSQLIG+TP+V+LN VS+G  A IA K E  +P  S+KDR   +M++DAE K +I+PGKTT++EPTSGN GI +AF+AA +GYK+ LTMP+  S+ERRV ++AFGA+L+
Sbjct:   44 VSSSPITCKAVSLSP-----PSTIEGLNIAEDVSQLIGKTPMVYLNNVSKGSVANIAAKLESMEPCCSVKDRIGYSMIDDAEQKGVITPGKTTLVEPTSGNTGIGLAFIAAARGYKITLTMPASMSMERRVILKAFGAELV 179          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSKP_SOLTU (Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.280e-34
Identity = 67/119 (56.30%), Postives = 92/119 (77.31%), Query Frame = 1
Query:  349 DLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            ++   NI  DV+QLIG TP+V+LN +++GC A IA K E+ +P  S+KDR   +M+ DAE K LISPGKT ++EPTSGN GI +AF+AA +GYK++LTMP+  SLERRV ++AFGA+L+
Sbjct:   63 EIEGLNIAEDVTQLIGNTPMVYLNTIAKGCVANIAAKLEIMEPCCSVKDRIGFSMIVDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELV 181          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.246e-33
Identity = 67/114 (58.77%), Postives = 90/114 (78.95%), Query Frame = 1
Query:  364 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            +I  DV+ LIG TPLV+LNKV +GC A IA K E+ +P +S+KDR   +M+ DAE K LI+PGK+ +IEPTSGN GI +AFMAA KGYK++LTMP+  S+ERR+ ++AFGA+L+
Sbjct:    7 SIASDVTALIGNTPLVYLNKVVDGCEAQIAAKLEIMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKAFGAELV 120          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK1_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.736e-33
Identity = 65/113 (57.52%), Postives = 90/113 (79.65%), Query Frame = 1
Query:  367 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            I +DV++LIG TPLV+LN+V++GC   +A K E  +P +S+KDR   +M+ DAE K LI+PGK+ +IEPTSGN GI +AFMAA KGY++VLTMP+  S+ERR+ ++AFGA+LI
Sbjct:    5 IAKDVTELIGNTPLVYLNRVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELI 117          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.185e-33
Identity = 64/115 (55.65%), Postives = 91/115 (79.13%), Query Frame = 1
Query:  361 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            + I +DV++LIG TPLV+LN+V +GC A +A K EM +P +S+KDR   +M+ DAENK LI+PG++ +IEPTSGN GI +AF+AA KGY++++ MP+  SLERR  +RAFGA+L+
Sbjct:    6 STIAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDAENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAFGAELV 120          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK_WHEAT (Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.378e-32
Identity = 65/113 (57.52%), Postives = 88/113 (77.88%), Query Frame = 1
Query:  367 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            I +DV++LIG TPLV+LNKV++GC   +A K E  +P +S+KDR   +M+ DAE K  I PGK+ +IEPTSGN GI +AFMAA KGY++VLTMP+  S+ERR+ ++AFGA+LI
Sbjct:    9 IAKDVTELIGNTPLVYLNKVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGFIVPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELI 121          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSKM_ARATH (Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.350e-32
Identity = 63/114 (55.26%), Postives = 90/114 (78.95%), Query Frame = 1
Query:  364 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            NI  +VSQLIG+TP+V+LN +++GC A IA K E+ +P  S+KDR   +M+ DAE K  ISPGK+ ++EPTSGN GI +AF+AA +GY+++LTMP+  S+ERRV ++AFGA+L+
Sbjct:  112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELV 225          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.236e-32
Identity = 62/116 (53.45%), Postives = 88/116 (75.86%), Query Frame = 1
Query:  358 ATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            A+ I +DV++LIG TPLV+LN V+EGC   +A K EM +P +S+KDR   +M+ DAE K LI PG++ +IEPTSGN G+ +AF AA KGYK+++TMP+  S+ERR+ + AFG +L+
Sbjct:    2 ASRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEQKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERRIILLAFGVELV 117          
BLAST of FC930531 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.839e-32
Identity = 64/113 (56.64%), Postives = 89/113 (78.76%), Query Frame = 1
Query:  367 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLI 705
            I +DV++LIG+TPLV+LN V++GC A +A K E  +P +S+KDR   +M+ DAE   LI+PG++ +IEPTSGN GI +AF+AA KGYK+++TMP+  SLERR  +RAFGA+LI
Sbjct:    8 IAKDVTELIGKTPLVYLNTVADGCVARVAAKLEGMEPCSSVKDRIGFSMITDAEKSGLITPGESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERRTILRAFGAELI 120          
The following BLAST results are available for this feature:
BLAST of FC930531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CYSKP_CAPAN8.631e-3556.20Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_SPIOL2.511e-3451.77Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_SOLTU3.280e-3456.30Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK2_ORYSJ1.246e-3358.77Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK1_ORYSJ4.736e-3357.52Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK_CITLA6.185e-3355.65Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK_WHEAT1.378e-3257.52Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=... [more]
CYSKM_ARATH2.350e-3255.26Cysteine synthase, mitochondrial OS=Arabidopsis th... [more]
CYSK1_BRAJU5.236e-3253.45Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK_SPIOL6.839e-3256.64Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34008E09EF PostHarvC1 Citrus clementina cDNA clone C34008E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930531 ID=FC930531; Name=FC930531; organism=Citrus clementina; type=EST; length=716bp
GGTTAAAACAAAGAAATTAGTATAAAAGGGGGGCTCCGGATTCTGTGACC
ACCACGCACCTTCTACATACTACCATCACCACACTCAGAGCCTTAATTTG
TTATCCGCTGCAAGTGCTGGTGGAAGTGGGAGTGGTTCTTGTAAAGAGTG
AATTATTATTTTTGCTCAAATTTAAAGTTCCTCCTCCAACCTCCATTATT
ATTAAAAATGGCTGCTGCTTTGAGGAGTTTCTTGAAGAAAAGAGCCTTAA
CATGCAGCGAACCCATGTTGATGAGAAGACTGGTCTCCTCACAGCCGGCG
CCGGTTGATTCTTCATCTTTTGCTCAGAGACTCAGAGATTTGCCCAAGGA
TCTTCCAGCTACCAACATCAAGAGAGATGTTTCCCAGCTCATTGGAAGAA
CCCCGCTTGTGTTTCTTAACAAAGTCAGTGAAGGATGTGGAGCTTATATT
GCTGTCAAGCAAGAAATGTTCCAACCCACTGCTAGCATCAAGGACAGACC
AGCAGTGGCCATGCTCGAAGATGCAGAAAATAAAAACTTAATTTCTCCCG
GAAAGACCACTATCATAGAGCCCACGTCAGGGAACATGGGAATAAGCATG
GCGTTTATGGCAGCAATGAAAGGGTATAAGATGGTTCTAACTATGCCCTC
TTATACAAGCTTGGAGAGGAGAGTGACAATGAGAGCATTTGGAGCTGATT
TAATCTCACAGATCCA
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