FC930535

Overview
NameFC930535
Unique NameFC930535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930535_ssr42 microsatellite FC930535_ssr42:42..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10197 contig Ccv1_Contig10197:4..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930535 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 73/175 (41.71%), Postives = 83/175 (47.43%), Query Frame = 2 
Query:  167 EANLHCLEPWTKRKRSKRPHNPPTEEEYLALCLVMLARGXXXXXXXXXXXXXXXXXQRQKXXXXXXXXXXXXXDQKLVFKCSVCDKAFSSYQALGGHKASHR--KGSGGGDEHXXXXXXXXXXXXXXXGV-----------PNATGRTHECSICHKSFPTGQALGGHKRCHYDGG 652
            E + H L+ W KRKRS+R  +   EEE LALCL+ML+RG                 QR +             +    FKCSVC K+FSSYQALGGHK SHR  + S   D                                AT R H CSIC K FPTGQALGGHKR HYDGG
Sbjct:   34 EESGHVLQGWAKRKRSRRQRS---EEENLALCLLMLSRGGK---------------QRVQAPQPESFAAPVPAE----FKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKHYDGG 186
The following BLAST results are available for this feature:
BLAST of FC930535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT1.146e-2341.71Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionC34008F01EF PostHarvC1 Citrus clementina cDNA clone C34008F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930535 ID=FC930535; Name=FC930535; organism=Citrus clementina; type=EST; length=704bp
GTCACAACTCACACCTCAAACATTCTGAATCTGAAATTAAGCTCTCTCTC
TCTCTCTCGCTCGCTCTTTCACACTCACTCTTGGTTTTAGATTCAAAAGA
GTAACGGAGATGGCACTGGAAGCTCTCAACTCTCCAACTACTTCGACGCC
GCCGTTTCACTTCGAAGAAGCTAATCTTCACTGCCTTGAGCCATGGACCA
AACGCAAGCGCTCAAAGCGTCCACACAATCCTCCAACTGAAGAAGAGTAT
CTCGCGCTCTGCCTCGTCATGCTTGCACGTGGCACAACCTCCACCGCCGC
CTTAACTAACTGCAACACGACCACCACCGCCTCACAGCGACAGAAGTCTC
CTGCTCCATCTACTGCTGCAACGACGTCGTCCTCTGACCAGAAGCTTGTC
TTCAAGTGCAGCGTGTGCGACAAGGCGTTTTCTTCTTACCAAGCCTTGGG
TGGTCACAAGGCCAGCCACCGTAAGGGATCTGGGGGCGGCGACGAACACT
CCGCTTCCACTACCACCAACACCAACGCAACCGCCACGACCACCGGCGTA
CCGAACGCCACTGGTAGGACCCACGAGTGTTCCATCTGTCACAAGTCCTT
CCCCACCGGCCAAGCCTTGGGCGGACACAAACGTTGTCACTACGATGGCG
GCGAGAAGAGCGGAGTGACGTCATCCGGGTCCAGTAGCACTCACAGCCAA
GTCA
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