FC930536

Overview
NameFC930536
Unique NameFC930536
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9817 contig Ccv1_Contig9817:7..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930536 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 2
Query:  515 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSY 712
            MALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SLSN+ +DSY
Sbjct:    3 MALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSNDDVDSY 68          
BLAST of FC930536 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 2
Query:  518 ALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSY 712
            ALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SLSN+ +DSY
Sbjct:    4 ALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSNDDVDSY 68          
BLAST of FC930536 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 53/67 (79.10%), Postives = 61/67 (91.04%), Query Frame = 2
Query:  512 KMALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSY 712
            +M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSLSK QLDEIL PAECTIV +LSN+Y+DSY
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSY 68          
BLAST of FC930536 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24
Identity = 52/67 (77.61%), Postives = 61/67 (91.04%), Query Frame = 2
Query:  512 KMALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSY 712
            +M LPVSAIGFEG+EKRLE+SF EPG+F+DP G+GLRSLSK QLDEIL PAECTIV +LSN+Y+DSY
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFSDPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSY 68          
BLAST of FC930536 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 2
Query:  515 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSY 712
            MALP SAIGFEGYEKRLE+SFFE   FADP G+GLR+L+K Q+DEIL+PAECTIV SLSN+YLDSY
Sbjct:    1 MALPASAIGFEGYEKRLEISFFESSFFADPDGKGLRALNKSQIDEILEPAECTIVDSLSNQYLDSY 66          
BLAST of FC930536 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 52/66 (78.79%), Postives = 60/66 (90.91%), Query Frame = 2
Query:  515 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSY 712
            M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSL+K QLDEIL PAECTIV +LSN+Y+DSY
Sbjct:    1 MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLTKAQLDEILGPAECTIVDNLSNDYVDSY 66          
BLAST of FC930536 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 2
Query:  515 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSY 712
            MAL  SAIGFEGYEKRLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSLSN  +DSY
Sbjct:    1 MALSTSAIGFEGYEKRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNNEVDSY 66          
BLAST of FC930536 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 2
Query:  515 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSY 712
            MAL  SAIGFEGYE RLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSLSN  +DSY
Sbjct:    1 MALSTSAIGFEGYENRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNNEVDSY 66          
BLAST of FC930536 vs. ExPASy Swiss-Prot
Match: DCAM_DAUCA (S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 2
Query:  515 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSY 712
            M+  VSAIGFEG+EKRLE+SFFEP  FADP G+GLR LSK+QLDE L PAECTIV+SLSNE++DSY
Sbjct:    1 MSSEVSAIGFEGFEKRLEISFFEPSFFADPEGKGLRVLSKNQLDEFLGPAECTIVASLSNEHVDSY 66          
BLAST of FC930536 vs. ExPASy Swiss-Prot
Match: DCAM1_DIACA (S-adenosylmethionine decarboxylase proenzyme 1 OS=Dianthus caryophyllus GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 48/64 (75.00%), Postives = 57/64 (89.06%), Query Frame = 2
Query:  521 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSY 712
            + +SAIGFEG+EKRLE+SFFEPG+F DP G+GLR+LSK QLDEIL PAECTIV SL+NE +DSY
Sbjct:   25 MALSAIGFEGFEKRLEISFFEPGIFVDPEGKGLRALSKAQLDEILGPAECTIVDSLANESVDSY 88          
The following BLAST results are available for this feature:
BLAST of FC930536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
DCAM_NICSY8.032e-2583.33S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_TOBAC3.052e-2483.08S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_SOLTU3.052e-2479.10S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_DATST6.799e-2477.61S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_CATRO6.799e-2478.79S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_SOLCI8.880e-2478.79S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_IPONI1.978e-2378.79S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_IPOBA7.518e-2377.27S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_DAUCA6.364e-2275.76S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM1_DIACA1.418e-2175.00S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34008F02EF PostHarvC1 Citrus clementina cDNA clone C34008F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930536 ID=FC930536; Name=FC930536; organism=Citrus clementina; type=EST; length=714bp
GAAAACGAGACGGACGGAAGGAAATCGAAATTCGTTTTGTGAAACAGAGT
TAAAAATCAACCCTTCTTTAATCCTCAAGGAATTTTATTATTTTCTTGGT
CTCTGAATCGAGGGTTTTGCTTCTTGGTTTAGTGGGTTTGTTTTCGTTAT
ATTATCTGAGAAAGGCTGAATGATCTAATGGAGTCAAAAGGTGGTAAGAA
GAAGTCTAGCAGTAGTTCCTTATTCTACGAAGCTCCTCTTGGTTACAGCA
TTGAAGACGTTCGACCTCACGGTGGCATAAAGAAGTTCAGATCAGCTGCT
TACTCAAACTGCGTCCGCAAACCATCCTGAGATCGTCCAATTTGTCCCAT
ACCCCCCCAAAAAAAAGCTCACTACTACTGCAATTTTAATTTTTTTTAGT
TTTAGCCGTCTTAATACTGCAATTTACTTGGCCTATTTCTTTTTCGACTT
CCCTCGTTCTCTCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCATTTGTT
TTCTGTAAGGCAAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGAAGGT
TATGAAAAGAGGCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTGA
TCCTGGAGGTAGGGGCCTCCGCTCTCTGTCAAAACATCAATTGGATGAAA
TACTGAAACCTGCGGAATGCACAATTGTTTCTTCGTTGTCAAATGAATAT
CTTGATTCATATGT
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