FC930537

Overview
NameFC930537
Unique NameFC930537
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5792 contig Ccv1_Contig5792:86..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930537 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.193e-66
Identity = 118/165 (71.52%), Postives = 137/165 (83.03%), Query Frame = 1
Query:  205 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQI 699
            RIL+TGGAGF+GSHL DKLM  + +EV V DN+FTG K N++ WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP +HPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++
Sbjct:   91 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEV 254          
BLAST of FC930537 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.193e-66
Identity = 118/165 (71.52%), Postives = 137/165 (83.03%), Query Frame = 1
Query:  205 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQI 699
            RIL+TGGAGF+GSHL DKLM  + +EV V DN+FTG K N++ WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP +HPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++
Sbjct:   90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEV 253          
BLAST of FC930537 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.193e-66
Identity = 118/165 (71.52%), Postives = 137/165 (83.03%), Query Frame = 1
Query:  205 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQI 699
            RIL+TGGAGF+GSHL DKLM  + +EV V DN+FTG K N++ WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP +HPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++
Sbjct:   90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEV 253          
BLAST of FC930537 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.193e-66
Identity = 118/165 (71.52%), Postives = 137/165 (83.03%), Query Frame = 1
Query:  205 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQI 699
            RIL+TGGAGF+GSHL DKLM  + +EV V DN+FTG K N++ WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP +HPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++
Sbjct:   90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEV 253          
BLAST of FC930537 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.193e-66
Identity = 118/165 (71.52%), Postives = 137/165 (83.03%), Query Frame = 1
Query:  205 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQI 699
            RIL+TGGAGF+GSHL DKLM  + +EV V DN+FTG K N++ WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP +HPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++
Sbjct:   90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEV 253          
BLAST of FC930537 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 5.476e-66
Identity = 118/165 (71.52%), Postives = 137/165 (83.03%), Query Frame = 1
Query:  205 RILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQI 699
            RIL+TGGAGF+GSHL DKLM  + +EV V DN+FTG K N++ WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP +HPQ E YWG+VNPIG R+CYDEGKRVAET+ + Y +Q G+++
Sbjct:   88 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEV 251          
BLAST of FC930537 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 63/174 (36.21%), Postives = 94/174 (54.02%), Query Frame = 1
Query:  208 ILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIAL 705
            ILVTGGAGFIGSH+VDKL+EN   +VI+ DN  TG+K+N+     +P+ E +  D+ +  L E      V+ + H A   +      NPV     NV+GT+N+L + ++  +   +  +S   VYG+P   P  E +     PI   S Y   K V E  +  Y+R +GI+ A+
Sbjct:    2 ILVTGGAGFIGSHIVDKLIEN-NYDVIILDNLTTGNKNNI-----NPKAEFVNADIRDKDLDEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSGGAVYGEPNYLPVDENH-----PINPLSPYGLSKYVGEEYIKLYNRLYGIEYAI 164          
BLAST of FC930537 vs. ExPASy Swiss-Prot
Match: GALE_STRMU (UDP-glucose 4-epimerase OS=Streptococcus mutans GN=galE PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 54/174 (31.03%), Postives = 84/174 (48.28%), Query Frame = 1
Query:  202 MRILVTGGAGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLI--------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQ 696
            M ILV GGAG+IGSH+VD+L+E  + EV+V D+  TG +  +     HP  +  + D+ +   +        +VD + H A  +        P+K    N  G + +L +    G + I+ +ST+  YG P   P  ET      P    + Y E K + ET+M    R +GI+
Sbjct:    1 MAILVLGGAGYIGSHMVDRLIEKGEEEVVVVDSLVTGHRAAV-----HPAAKFYQGDLADREFMSMVFRENPDVDAVIHFAAYSLVAESMKKPLKYFDNNTAGMIKLLEVMSEFGVKYIVFSSTAATYGIPDEIPIKET-----TPQRPINPYGESKLMMETIMKWSDRAYGIK 164          
BLAST of FC930537 vs. ExPASy Swiss-Prot
Match: ACBB_ACTS5 (dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain 50/110) GN=acbB PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 58/182 (31.87%), Postives = 83/182 (45.60%), Query Frame = 1
Query:  202 MRILVTGGAGFIGSHLVDKLMENE------KNEVIVADNY-FTGSKDNLKKWIGHPRFELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQIAL 705
            M+ILVTGGAGFIGSH V  L+  +        +V V D   + G+  NL +    PRF  +R D+ +  LIE      D + H A               + +N++GT  +L  A R  +G R L  ST EVYG           W   +P+   S Y   K  ++ L   YH+ HG+ + +
Sbjct:    1 MKILVTGGAGFIGSHFVTSLISGDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFSFVRGDICDEGLIEGLMARHDTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDAALRHHIG-RFLHVSTDEVYGS-----IDTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMDVVV 176          
BLAST of FC930537 vs. ExPASy Swiss-Prot
Match: STRE_STRGR (dTDP-glucose 4,6-dehydratase OS=Streptomyces griseus GN=strE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 57/173 (32.95%), Postives = 80/173 (46.24%), Query Frame = 1
Query:  208 ILVTGGAGFIGSHLVDKLM--ENEKNEVIVADNYFT--GSKDNLKKWIGHPRFELIRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLIHPQPETYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIQI 699
            +LVTG AGFIGS  V  L+      + V+ A +  T  G+ DNL    GHPR+   R D+ +     ++   DQ+ HLA  +       +    ++TNV GT  +L  A R G A  +  ST EVYG  L H      W    P+   S Y   K   + L   +H  HG+ +
Sbjct:    5 LLVTGAAGFIGSQYVRTLLGPGGPPDVVVTALDALTYAGNPDNLAAVRGHPRYRFERGDICDAPGRRVMAGQDQVVHLAAESHVDRSLLDASVFVRTNVHGTQTLLDAATRHGVASFVQVSTDEVYGS-LEHGS----WTEDEPLRPNSPYSASKASGDLLALAHHVSHGLDV 172          
The following BLAST results are available for this feature:
BLAST of FC930537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
UXS1_XENTR4.193e-6671.52UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
UXS1_RAT4.193e-6671.52UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB4.193e-6671.52UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE4.193e-6671.52UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN4.193e-6671.52UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
UXS1_DANRE5.476e-6671.52UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
GALE_METJA1.616e-1736.21Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]
GALE_STRMU1.198e-1231.03UDP-glucose 4-epimerase OS=Streptococcus mutans GN... [more]
ACBB_ACTS52.044e-1231.87dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (... [more]
STRE_STRGR1.014e-1132.95dTDP-glucose 4,6-dehydratase OS=Streptomyces grise... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34008F03EF PostHarvC1 Citrus clementina cDNA clone C34008F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930537 ID=FC930537; Name=FC930537; organism=Citrus clementina; type=EST; length=706bp
GATTTTTAAGGACGGTTTTTGATTCTATAAATAAGGAGTCTCTGATCTTG
AGCTTTTGTGGATCAAAACAGCGACTGAGTTCAGGTATTGAATTTGATAA
TTGAGATCTGAACAATGGCTAATGATGGAGAGAATCAAACAACTACTAAG
CCGCCACCATTGCCATCTCCATTGAGATTCTCCAAATTCTTTCAGTCAAA
TATGAGAATTTTGGTGACTGGAGGAGCTGGATTCATTGGTTCTCACCTTG
TTGACAAATTGATGGAAAATGAGAAAAACGAGGTGATTGTCGCTGATAAC
TACTTCACTGGCTCGAAGGACAATCTTAAGAAATGGATTGGTCACCCAAG
ATTTGAGCTCATTCGTCATGATGTGACAGAGCCATTGTTGATCGAGGTTG
ATCAGATTTACCACCTTGCATGCCCTGCTTCTCCGATTTTCTACAAGTAT
AATCCTGTAAAGACAATTAAGACAAATGTGATTGGCACCCTAAACATGCT
AGGACTTGCTAAGCGAGTTGGAGCGAGGATTTTACTCACATCAACTTCAG
AGGTTTATGGTGATCCTCTTATTCACCCTCAACCTGAGACCTATTGGGGT
AATGTCAATCCAATTGGGGTTCGTAGCTGCTATGATGAGGGAAAACGTGT
GGCTGAGACTTTGATGTTTGATTATCATAGACAGCATGGGATACAAATCG
CATTGC
back to top