FC930542

Overview
NameFC930542
Unique NameFC930542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930542 vs. ExPASy Swiss-Prot
Match: Y3136_ARATH (Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana GN=At3g21360 PE=1 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.280e-79
Identity = 144/214 (67.29%), Postives = 175/214 (81.78%), Query Frame = 2
Query:   74 IEIKIPQQRNYNNINNSCPFPSVLSPN----PATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYANFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWKSTFLTEDKSIAEERAARLG 703
            +E  IPQQ++Y     S PFP+V+SP     P    ++    + ++TQK +LDSLL ++G+VLFRGF  V +A +FNDVVEAFG++ELPYVGGAAPRT++VGRVFTANESPPDQKIPFHHEMAQV EFPSKLFF+CE+EP  GGETPIVLSH+VYERMK K+  FV++LE+HGL+Y RVLGE DDPSSPIGRGWKSTFLT DK++AE+RA  LG
Sbjct:    7 VETPIPQQKHYE----SKPFPAVISPPSASIPIPALSLPLFTQTIKTQKHYLDSLLHESGAVLFRGFP-VNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFHHEMAQVREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDDDPSSPIGRGWKSTFLTHDKNLAEQRAVDLG 215          
The following BLAST results are available for this feature:
BLAST of FC930542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3136_ARATH3.280e-7967.29Clavaminate synthase-like protein At3g21360 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC34008F08EF PostHarvC1 Citrus clementina cDNA clone C34008F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930542 ID=FC930542; Name=FC930542; organism=Citrus clementina; type=EST; length=703bp
GCTTGTCTCTTTGATCACCTTGAAACTCCGCAGCACTGCAAACAAAAAAA
CCATCGGCATGGCAGATCATTTCATAGAAATCAAAATCCCACAACAAAGA
AACTACAACAACATCAACAATTCCTGTCCTTTCCCTTCAGTTCTCTCTCC
AAACCCAGCAACAACGGCAACAGTTTCTCGTTTGGCTGAAAAAGTCAGAA
CCCAGAAACCGTTTCTCGACTCTTTGTTGCTGAAAGCAGGATCAGTTCTT
TTCAGGGGATTTGATGATGTGAAGACAGCCAAAGAATTCAACGACGTCGT
TGAGGCTTTTGGTTACGAGGAGCTGCCTTATGTGGGCGGTGCGGCTCCCA
GAACCAACATTGTTGGTAGGGTTTTTACGGCCAATGAGTCCCCGCCTGAT
CAGAAGATTCCTTTTCACCATGAAATGGCTCAGGTTCCTGAGTTCCCATC
AAAATTATTCTTCTTTTGTGAAGTGGAGCCAGGAAGTGGGGGAGAAACTC
CAATTGTCCTAAGTCACATTGTCTATGAGAGAATGAAGCATAAATACGCT
AACTTCGTTGAACAATTAGAACAGCATGGGTTGATTTATACACGTGTGTT
AGGAGAAAAGGATGATCCTTCATCTCCAATTGGCCGTGGCTGGAAATCCA
CTTTCTTGACTGAAGACAAGAGTATTGCTGAAGAAAGGGCAGCTAGGCTG
GGA
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